Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G44110 - ( ATJ3 protein binding )
34 Proteins interacs with AT3G44110| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G48100
   | Experimentaltwo hybrid | FSW = 0.0166
| Class D:nucleus (p = 0.78) | ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
| AT2G30360
| Experimentaltwo hybridAffinity Capture-Western | FSW = 0.0228
| Unknown | SIP4 (SOS3-INTERACTING PROTEIN 4) KINASE/ PROTEIN KINASE |
| AT3G48750
| PredictedSynthetic Lethality | FSW = 0.0258
| Class C:plasma membranenucleus | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
| AT1G12840
| Predictedtwo hybridtwo hybrid | FSW = 0.0206
| Class C:plasma membrane | DET3 (DE-ETIOLATED 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT1G16030
| PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westernbiochemicalco-fractionationCo-fractionationPhenotypic EnhancementSynthetic Lethality | FSW = 0.0518
| Class C:plasma membrane | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
| AT5G22060
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.3333
| Class C:plasma membrane | ATJ2 PROTEIN BINDING |
| AT1G09210
| PredictedSynthetic Lethality | FSW = 0.0206
| Class C:plasma membrane | CALRETICULIN 2 (CRT2) |
| AT3G61650
| PredictedSynthetic Lethality | FSW = 0.0432
| Class C:plasma membrane | TUBG1 (GAMMA-TUBULIN) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
| AT1G10900
| PredictedSynthetic Lethality | FSW = 0.0351
| Class C:plasma membrane | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
| AT5G60790
| PredictedAffinity Capture-MS | FSW = 0.0130
| Class C:plasma membrane | ATGCN1 TRANSPORTER |
| AT3G62600
| PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1579
| Class C:plasma membrane | ATERDJ3B HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
| AT1G03190
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0243
| Class C:nucleus | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
| AT5G09590
| Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0071
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
| AT1G58030
| PredictedAffinity Capture-MS | FSW = 0.0197
| Unknown | CAT2 (CATIONIC AMINO ACID TRANSPORTER 2) AMINO ACID TRANSMEMBRANE TRANSPORTER |
| AT4G39960
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1026
| Unknown | DNAJ HEAT SHOCK FAMILY PROTEIN |
| AT3G11630
| PredictedSynthetic Lethality | FSW = 0.0137
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
| AT1G28210
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0515
| Unknown | ATJ1 HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
| AT5G53540
| Predictedtwo hybrid | FSW = 0.0250
| Unknown | MSP1 PROTEIN PUTATIVE / INTRAMITOCHONDRIAL SORTING PROTEIN PUTATIVE |
| AT5G63960
| PredictedSynthetic Lethality | FSW = 0.0423
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT3G56640
| Predictedtwo hybridtwo hybrid | FSW = 0.0055
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
| AT5G03560
| Predictedtwo hybridtwo hybrid | FSW = 0.0239
| Unknown | NUCLEOBASECATION SYMPORTER |
| AT5G08420
| Predictedtwo hybridtwo hybrid | FSW = 0.0045
| Unknown | RNA BINDING |
| AT5G26180
| Predictedtwo hybridtwo hybrid | FSW = 0.0256
| Unknown | NOL1/NOP2/SUN FAMILY PROTEIN |
| AT4G20020
| PredictedAffinity Capture-Western | FSW = 0.0431
| Unknown | UNKNOWN PROTEIN |
| AT4G35890
| PredictedAffinity Capture-Western | FSW = 0.0206
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
| AT1G11660
| Predictedinterologs mappinginterologs mapping | FSW = 0.0556
| Unknown | HEAT SHOCK PROTEIN PUTATIVE |
| AT1G10350
| Predictedinterologs mappingSynthetic LethalityEnriched domain pairCo-expression | FSW = 0.0463
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
| AT2G45000
| PredictedPhenotypic Suppression | FSW = 0.0256
| Unknown | EMB2766 (EMBRYO DEFECTIVE 2766) STRUCTURAL CONSTITUENT OF NUCLEAR PORE |
| AT5G26680
| PredictedSynthetic Lethality | FSW = 0.0271
| Unknown | ENDONUCLEASE PUTATIVE |
| AT1G77720
| PredictedSynthetic Lethality | FSW = 0.0610
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT1G12270
| PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0949
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
| AT1G59725
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0923
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
| AT2G43770
| PredictedGene fusion method | FSW = 0.0279
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G52730
| PredictedGene fusion method | FSW = 0.0504
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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