Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G44190 - ( pyridine nucleotide-disulphide oxidoreductase family protein )
17 Proteins interacs with AT3G44190Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G09590 | PredictedSynthetic Lethality | FSW = 0.0421
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT1G33140 | PredictedAffinity Capture-Westernsynthetic growth defectReconstituted Complex | FSW = 0.1642
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G16150 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.1893
| Unknown | PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G25910 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Western | FSW = 0.2529
| Unknown | NFU3 STRUCTURAL MOLECULE |
AT3G57050 | PredictedAffinity Capture-Westernsynthetic growth defect | FSW = 0.2667
| Unknown | CBL (CYSTATHIONINE BETA-LYASE) CYSTATHIONINE BETA-LYASE |
AT4G32360 | PredictedAffinity Capture-Western | FSW = 0.2727
| Unknown | NADP ADRENODOXIN-LIKE FERREDOXIN REDUCTASE |
AT5G22140 | PredictedPhylogenetic profile method | FSW = 0.2857
| Unknown | PYRIDINE NUCLEOTIDE-DISULPHIDE OXIDOREDUCTASE FAMILY PROTEIN |
AT3G18600 | PredictedAffinity Capture-WesternCo-purificationSynthetic LethalityReconstituted Complex | FSW = 0.1186
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G41380 | PredictedAffinity Capture-Western | FSW = 0.0125
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT1G10060 | Predictedtwo hybrid | FSW = 0.0118
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
AT1G01020 | Predictedinterologs mappingReconstituted Complex | FSW = 0.0968
| Unknown | ARV1 |
AT5G10330 | Predictedbiochemical | FSW = 0.0968
| Unknown | HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE |
AT1G49520 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerntwo hybridCo-purificationPhenotypic Enhancement | FSW = 0.2043
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT3G06460 | PredictedAffinity Capture-Western | FSW = 0.0524
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT4G17510 | PredictedAffinity Capture-Western | FSW = 0.1553
| Unknown | UCH3 (UBIQUITIN C-TERMINAL HYDROLASE 3) UBIQUITIN THIOLESTERASE |
AT4G26510 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.1246
| Unknown | ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE |
AT5G43340 | PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexReconstituted ComplexAffinity Capture-WesternCo-purification | FSW = 0.2735
| Unknown | PHT6 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454