Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G44310 - ( NIT1 indole-3-acetonitrile nitrilase/ indole-3-acetonitrile nitrile hydratase/ nitrilase )
17 Proteins interacs with AT3G44310Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G62030 | PredictedAffinity Capture-Western | FSW = 0.0276
| Class C:plastidnucleus | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CHLOROPLAST / CYCLOPHILIN / ROTAMASE / CYCLOSPORIN A-BINDING PROTEIN (ROC4) |
AT5G53480 | Predictedtwo hybridAffinity Capture-Westernfluorescence acceptor donor pairfluorescence acceptor donor pair | FSW = 0.0057
| Class C:plastid | IMPORTIN BETA-2 PUTATIVE |
AT1G04750 | PredictedPhenotypic Enhancement | FSW = 0.0146
| Class C:plasma membrane | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT3G13445 | PredictedPhenotypic Enhancement | FSW = 0.0104
| Class C:nucleus | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT4G09800 | PredictedPhenotypic Enhancement | FSW = 0.0145
| Class C:nucleus | RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G57990 | PredictedSynthetic Lethality | FSW = 0.0209
| Unknown | UNKNOWN PROTEIN |
AT3G44300 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.0970
| Unknown | NIT2 (NITRILASE 2) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE |
AT3G26590 | Predictedbiochemical | FSW = 0.0268
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT2G19980 | PredictedPhenotypic Enhancement | FSW = 0.0458
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G39200 | PredictedPhenotypic Enhancement | FSW = 0.0537
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT5G22300 | PredictedPhylogenetic profile method | FSW = 0.3232
| Unknown | NIT4 (NITRILASE 4) 3-CYANOALANINE HYDRATASE/ CYANOALANINE NITRILASE/ INDOLE-3-ACETONITRILE NITRILASE/ NITRILASE/ NITRILE HYDRATASE |
AT3G44320 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile method | FSW = 0.1935
| Unknown | NIT3 (NITRILASE 3) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE |
AT3G27440 | PredictedPhenotypic Enhancement | FSW = 0.0422
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT1G55300 | PredictedPhenotypic Enhancement | FSW = 0.0313
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT4G19645 | PredictedPhenotypic Enhancement | FSW = 0.0202
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT5G15240 | PredictedPhenotypic Enhancement | FSW = 0.0429
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G64760 | PredictedPhenotypic Enhancement | FSW = 0.0291
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454