Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G44320 - ( NIT3 (NITRILASE 3) indole-3-acetonitrile nitrilase/ indole-3-acetonitrile nitrile hydratase/ nitrilase )

24 Proteins interacs with AT3G44320
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G44300

Predicted

Shared biological function

Gene neighbors method

Phylogenetic profile method

FSW = 0.0736

Unknown

NIT2 (NITRILASE 2) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE
AT3G26590

Predicted

Affinity Capture-MS

FSW = 0.0285

Unknown

MATE EFFLUX FAMILY PROTEIN
AT3G44310

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

FSW = 0.1935

Unknown

NIT1 INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE
AT3G14420

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

Co-purification

FSW = 0.2597

Unknown

(S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE
AT3G03920

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1681

Unknown

GAR1 RNA-BINDING REGION FAMILY PROTEIN
AT5G63980

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Synthetic Rescue

Affinity Capture-Western

FSW = 0.1178

Unknown

SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE
AT1G10070

Predicted

Synthetic Rescue

FSW = 0.0242

Unknown

ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT1G48860

Predicted

Phenotypic Enhancement

FSW = 0.0125

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE
AT3G13560

Predicted

two hybrid

two hybrid

FSW = 0.0325

Unknown

GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT3G48040

Predicted

Affinity Capture-MS

FSW = 0.0584

Unknown

ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10) GTP BINDING / GTPASE
AT4G19690

Predicted

Co-purification

Affinity Capture-MS

FSW = 0.0654

Unknown

IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER
AT4G28860

Predicted

Reconstituted Complex

Affinity Capture-Western

FSW = 0.0863

Unknown

CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G13460

Predicted

synthetic growth defect

Affinity Capture-Western

FSW = 0.2020

Unknown

ECT2 PROTEIN BINDING
AT5G02730

Predicted

Affinity Capture-MS

FSW = 0.0499

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT5G22300

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.2452

Unknown

NIT4 (NITRILASE 4) 3-CYANOALANINE HYDRATASE/ CYANOALANINE NITRILASE/ INDOLE-3-ACETONITRILE NITRILASE/ NITRILASE/ NITRILE HYDRATASE
AT1G06090

Predicted

interologs mapping

FSW = 0.0761

Unknown

FATTY ACID DESATURASE FAMILY PROTEIN
AT1G10210

Predicted

interologs mapping

FSW = 0.0155

Unknown

ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE
AT2G47970

Predicted

Synthetic Lethality

Affinity Capture-MS

Synthetic Lethality

Synthetic Lethality

Affinity Capture-MS

Synthetic Lethality

Phenotypic Enhancement

synthetic growth defect

FSW = 0.2585

Unknown

NPL4 FAMILY PROTEIN
AT3G24090

Predicted

Affinity Capture-MS

FSW = 0.0201

Unknown

GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE
AT1G27040

Predicted

Phenotypic Enhancement

FSW = 0.0052

Unknown

NITRATE TRANSPORTER PUTATIVE
AT4G16370

Predicted

Affinity Capture-MS

FSW = 0.0677

Unknown

ATOPT3 (OLIGOPEPTIDE TRANSPORTER) OLIGOPEPTIDE TRANSPORTER
AT5G15240

Predicted

Phenotypic Enhancement

FSW = 0.0794

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN
AT5G38890

Predicted

Affinity Capture-MS

FSW = 0.0054

Unknown

EXORIBONUCLEASE-RELATED
AT5G61050

Predicted

Affinity Capture-MS

FSW = 0.0334

Unknown

HISTONE DEACETYLASE-RELATED / HD-RELATED

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454