Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G44590 - ( 60S acidic ribosomal protein P2 (RPP2D) )
27 Proteins interacs with AT3G44590Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G02090 | Predictedco-fractionationCo-fractionation | FSW = 0.0140
| Unknown | MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE |
AT3G62870 | PredictedAffinity Capture-MS | FSW = 0.0141
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.0706
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT1G50310 | PredictedAffinity Capture-WesternAffinity Capture-MSfluorescence acceptor donor pairfluorescence acceptor donor pair | FSW = 0.0817
| Unknown | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G47700 | Predictedtwo hybrid | FSW = 0.0476
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1C) |
AT1G13320 | PredictedAffinity Capture-MS | FSW = 0.0636
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT3G56760 | PredictedAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted ComplexColocalizationAffinity Capture-WesternCo-purificationfluorescence acceptor donor pairfluorescence acceptor donor pairtwo hybrid | FSW = 0.2245
| Unknown | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
AT4G22120 | Predictedtwo hybrid | FSW = 0.0995
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G27070 | PredictedAffinity Capture-MS | FSW = 0.0197
| Unknown | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE |
AT1G09270 | PredictedAffinity Capture-MS | FSW = 0.0602
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
AT1G22550 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0909
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G26140 | PredictedAffinity Capture-MS | FSW = 0.1168
| Unknown | UNKNOWN PROTEIN |
AT1G30220 | PredictedReconstituted Complex | FSW = 0.0323
| Unknown | INT2 (INOSITOL TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G31170 | PredictedAffinity Capture-MS | FSW = 0.0300
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G61010 | Predictedtwo hybrid | FSW = 0.0426
| Unknown | CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) PROTEIN BINDING |
AT2G03667 | PredictedAffinity Capture-MS | FSW = 0.0757
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
AT2G22040 | PredictedAffinity Capture-MS | FSW = 0.0345
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G20693 | Predictedtwo hybrid | FSW = 0.0359
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT2G35390 | Predictedtwo hybrid | FSW = 0.0329
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT3G54630 | Predictedtwo hybrid | FSW = 0.0119
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK) |
AT4G27960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternColocalizationfluorescence acceptor donor pairfluorescence acceptor donor pair | FSW = 0.0514
| Unknown | UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE |
AT5G52350 | PredictedAffinity Capture-Western | FSW = 0.1177
| Unknown | ATEXO70A3 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A3) PROTEIN BINDING |
AT4G26810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0594
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.0405
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G66630 | Predictedtwo hybrid | FSW = 0.1595
| Unknown | DAR5 (DA1-RELATED PROTEIN 5) ZINC ION BINDING |
AT5G12410 | Predictedtwo hybridCo-expression | FSW = 0.0107
| Unknown | THUMP DOMAIN-CONTAINING PROTEIN |
AT4G00810 | Predictedtwo hybridCo-expression | FSW = 0.0317
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454