Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G44620 - ( protein tyrosine phosphatase )

4 Proteins interacs with AT3G44620
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G19330

Predicted

Colocalization

FSW = 0.0401

Unknown

ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN
AT3G54280

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0476

Unknown

RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING
AT4G25340

Predicted

Affinity Capture-Western

Reconstituted Complex

biochemical

FSW = 0.0149

Unknown

IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT3G12340

Predicted

Affinity Capture-Western

biochemical

Reconstituted Complex

FSW = 0.0410

Unknown

FK506 BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454