Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G44850 - ( protein kinase-related )

18 Proteins interacs with AT3G44850
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G02090

Predicted

two hybrid

FSW = 0.0696

Unknown

MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE
AT1G56070

Predicted

two hybrid

FSW = 0.0392

Unknown

LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING
AT5G09810

Predicted

two hybrid

FSW = 0.0346

Unknown

ACT7 (ACTIN 7) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G64270

Predicted

two hybrid

FSW = 0.0320

Unknown

SPLICING FACTOR PUTATIVE
AT1G10430

Predicted

two hybrid

FSW = 0.0123

Unknown

PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G16610

Predicted

Affinity Capture-MS

FSW = 0.0786

Unknown

SR45 RNA BINDING / PROTEIN BINDING
AT1G02840

Predicted

in vivo

in vivo

in vitro

in vitro

Affinity Capture-MS

Co-expression

FSW = 0.1016

Unknown

SR1 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G60900

Predicted

two hybrid

FSW = 0.1637

Unknown

U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT PUTATIVE
AT1G67500

Predicted

two hybrid

FSW = 0.0303

Unknown

ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT3G18860

Predicted

two hybrid

Co-expression

FSW = 0.0122

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G09100

Predicted

two hybrid

FSW = 0.0368

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT5G22840

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2210

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G53030

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0417

Unknown

SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE
AT4G35500

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2604

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT2G17530

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1984

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT5G59600

Predicted

Gene fusion method

FSW = 0.1023

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT1G62860Predicted

Gene fusion method

FSW = 0.0476

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT2G20540

Predicted

Gene fusion method

FSW = 0.0775

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454