Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G45190 - ( SIT4 phosphatase-associated family protein )
22 Proteins interacs with AT3G45190Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G16480 | PredictedAffinity Capture-MS | FSW = 0.0108
| Unknown | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT5G57490 | PredictedAffinity Capture-MS | FSW = 0.0426
| Unknown | VDAC4 (VOLTAGE DEPENDENT ANION CHANNEL 4) VOLTAGE-GATED ANION CHANNEL |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.0076
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT5G06290 | Predictedbiochemical | FSW = 0.0247
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT1G51040 | PredictedAffinity Capture-MS | FSW = 0.0187
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT3G48930 | Predictedbiochemical | FSW = 0.0128
| Unknown | EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G23450 | Predictedtwo hybrid | FSW = 0.0334
| Unknown | ATLCBK1 (A THALIANA LONG-CHAIN BASE (LCB) KINASE 1) D-ERYTHRO-SPHINGOSINE KINASE/ DIACYLGLYCEROL KINASE |
AT3G46900 | PredictedAffinity Capture-MS | FSW = 0.0182
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT4G32830 | Predictedtwo hybrid | FSW = 0.0267
| Unknown | ATAUR1 (ATAURORA1) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G09570 | PredictedPhenotypic Suppression | FSW = 0.0329
| Unknown | CPK4 CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE |
AT5G27720 | PredictedAffinity Capture-MS | FSW = 0.0110
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT4G18880 | PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | AT-HSFA4A DNA BINDING / TRANSCRIPTION FACTOR |
AT5G47630 | PredictedAffinity Capture-MS | FSW = 0.0464
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT5G10330 | PredictedAffinity Capture-MS | FSW = 0.0395
| Unknown | HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE |
AT5G51290 | Predictedtwo hybrid | FSW = 0.0324
| Unknown | CERAMIDE KINASE-RELATED |
AT1G02100 | PredictedAffinity Capture-MS | FSW = 0.0252
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT2G03690 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0718
| Unknown | COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN |
AT1G15440 | PredictedAffinity Capture-MS | FSW = 0.0064
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G78770 | Predictedsynthetic growth defect | FSW = 0.0195
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT3G06470 | PredictedSynthetic Rescuebiochemical | FSW = 0.0477
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT4G04700 | PredictedAffinity Capture-MS | FSW = 0.0417
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT2G28360 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0156
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454