Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G45190 - ( SIT4 phosphatase-associated family protein )

22 Proteins interacs with AT3G45190
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G16480

Predicted

Affinity Capture-MS

FSW = 0.0108

Unknown

MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING
AT5G57490

Predicted

Affinity Capture-MS

FSW = 0.0426

Unknown

VDAC4 (VOLTAGE DEPENDENT ANION CHANNEL 4) VOLTAGE-GATED ANION CHANNEL
AT3G11630

Predicted

Affinity Capture-MS

FSW = 0.0076

Unknown

2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT5G06290

Predicted

biochemical

FSW = 0.0247

Unknown

2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN
AT1G51040

Predicted

Affinity Capture-MS

FSW = 0.0187

Unknown

PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE
AT3G48930

Predicted

biochemical

FSW = 0.0128

Unknown

EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G23450

Predicted

two hybrid

FSW = 0.0334

Unknown

ATLCBK1 (A THALIANA LONG-CHAIN BASE (LCB) KINASE 1) D-ERYTHRO-SPHINGOSINE KINASE/ DIACYLGLYCEROL KINASE
AT3G46900

Predicted

Affinity Capture-MS

FSW = 0.0182

Unknown

COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER
AT4G32830

Predicted

two hybrid

FSW = 0.0267

Unknown

ATAUR1 (ATAURORA1) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G09570

Predicted

Phenotypic Suppression

FSW = 0.0329

Unknown

CPK4 CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE
AT5G27720

Predicted

Affinity Capture-MS

FSW = 0.0110

Unknown

EMB1644 (EMBRYO DEFECTIVE 1644)
AT4G18880

Predicted

Affinity Capture-MS

FSW = 0.0152

Unknown

AT-HSFA4A DNA BINDING / TRANSCRIPTION FACTOR
AT5G47630

Predicted

Affinity Capture-MS

FSW = 0.0464

Unknown

MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING
AT5G10330Predicted

Affinity Capture-MS

FSW = 0.0395

Unknown

HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE
AT5G51290

Predicted

two hybrid

FSW = 0.0324

Unknown

CERAMIDE KINASE-RELATED
AT1G02100

Predicted

Affinity Capture-MS

FSW = 0.0252

Unknown

LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN
AT2G03690

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0718

Unknown

COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN
AT1G15440

Predicted

Affinity Capture-MS

FSW = 0.0064

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G78770

Predicted

synthetic growth defect

FSW = 0.0195

Unknown

CELL DIVISION CYCLE FAMILY PROTEIN
AT3G06470

Predicted

Synthetic Rescue

biochemical

FSW = 0.0477

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT4G04700

Predicted

Affinity Capture-MS

FSW = 0.0417

Unknown

CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT2G28360

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0156

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK)

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454