Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G45280 - ( SYP72 (SYNTAXIN OF PLANTS 72) protein transporter )
22 Proteins interacs with AT3G45280Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G61450 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1600
| Class C:endoplasmic reticulum | SYP73 (SYNTAXIN OF PLANTS 73) PROTEIN TRANSPORTER |
AT3G62870 | Predictedtwo hybrid | FSW = 0.0067
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G10350 | Predictedtwo hybridReconstituted Complextwo hybrid | FSW = 0.0830
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT3G26590 | Predictedbiochemical | FSW = 0.0305
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT2G39290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernbiochemical | FSW = 0.1250
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT2G29690 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted ComplexCo-purification | FSW = 0.6149
| Unknown | ASA2 (ANTHRANILATE SYNTHASE 2) ANTHRANILATE SYNTHASE |
AT5G23900 | PredictedAffinity Capture-MS | FSW = 0.1892
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT4G04720 | PredictedAffinity Capture-MS | FSW = 0.0263
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G54840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted Complex | FSW = 0.1565
| Unknown | SGP1 GTP BINDING |
AT1G09060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.5143
| Unknown | TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN |
AT2G17130 | PredictedReconstituted Complex | FSW = 0.2949
| Unknown | IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2) ISOCITRATE DEHYDROGENASE (NAD+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0334
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.0424
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G03690 | PredictedAffinity Capture-MS | FSW = 0.0206
| Unknown | COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN |
AT2G20280 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4694
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT2G38600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3912
| Unknown | ACID PHOSPHATASE CLASS B FAMILY PROTEIN |
AT3G15460 | PredictedReconstituted Complex | FSW = 0.1059
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.1014
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT3G59790 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2224
| Unknown | ATMPK10 MAP KINASE/ KINASE |
AT5G13480 | PredictedAffinity Capture-MS | FSW = 0.0776
| Unknown | FY PROTEIN BINDING |
AT5G16290 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.4180
| Unknown | ACETOLACTATE SYNTHASE SMALL SUBUNIT PUTATIVE |
AT5G66360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.7024
| Unknown | RIBOSOMAL RNA ADENINE DIMETHYLASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454