Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G45590 - ( ATSEN1 (SPLICING ENDONUCLEASE 1) nuclease/ nucleic acid binding / tRNA-intron endonuclease )
26 Proteins interacs with AT3G45590Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G16240 | PredictedPhenotypic Enhancement | FSW = 0.0548
| Unknown | SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR |
AT3G62870 | Predictedtwo hybridsynthetic growth defect | FSW = 0.0225
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G11940 | PredictedAffinity Capture-MS | FSW = 0.1032
| Unknown | ATRPS5A (RIBOSOMAL PROTEIN 5A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G26970 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0731
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT5G45420 | PredictedAffinity Capture-MS | FSW = 0.0406
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT5G23740 | PredictedAffinity Capture-MS | FSW = 0.0641
| Unknown | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G47510 | Predictedsynthetic growth defectsynthetic growth defectAffinity Capture-Westernsynthetic growth defectAffinity Capture-Western | FSW = 0.1741
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT2G20580 | PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT3G10540 | PredictedAffinity Capture-Western | FSW = 0.0800
| Unknown | 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE PUTATIVE |
AT5G20890 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0286
| Unknown | CHAPERONIN PUTATIVE |
AT2G07640 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-Western | FSW = 0.1647
| Unknown | D2D4-DIENOYL-COA REDUCTASE-RELATED |
AT1G29260 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0414
| Unknown | PEX7 PEROXISOME MATRIX TARGETING SIGNAL-2 BINDING / PROTEIN BINDING |
AT2G13570 | PredictedAffinity Capture-MS | FSW = 0.0800
| Unknown | NF-YB7 (NUCLEAR FACTOR Y SUBUNIT B7) TRANSCRIPTION FACTOR |
AT2G41380 | PredictedAffinity Capture-Western | FSW = 0.0313
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT3G57240 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-Western | FSW = 0.2721
| Unknown | BG3 (BETA-13-GLUCANASE 3) CELLULASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT4G10920 | Predictedtwo hybrid | FSW = 0.0064
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT3G04680 | PredictedAffinity Capture-MS | FSW = 0.0480
| Unknown | CLPS3 (CLP-SIMILAR PROTEIN 3) BINDING |
AT3G57360 | PredictedAffinity Capture-MSin vivo | FSW = 0.1021
| Unknown | UNKNOWN PROTEIN |
AT1G62880 | PredictedAffinity Capture-MS | FSW = 0.1001
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.0489
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G53650 | PredictedAffinity Capture-Western | FSW = 0.0279
| Unknown | HISTONE H2B PUTATIVE |
AT5G65860 | PredictedAffinity Capture-Western | FSW = 0.1488
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT4G25860 | PredictedAffinity Capture-MS | FSW = 0.0545
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.0417
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G20560 | PredictedAffinity Capture-MS | FSW = 0.0255
| Unknown | BETA-13-GLUCANASE PUTATIVE |
AT5G60230 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1500
| Unknown | SEN2 (SPLICING ENDONUCLEASE 2) NUCLEASE/ TRNA-INTRON ENDONUCLEASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454