Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G45640 - ( ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) MAP kinase/ kinase/ protein binding / protein kinase )
26 Proteins interacs with AT3G45640Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G63310 | Experimentalpull downtwo hybridReconstituted Complex | FSW = 0.0387
| Unknown | NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE/ PROTEIN BINDING |
AT1G51660 | Experimental | FSW = 0.2000
| Unknown | ATMKK4 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4) MAP KINASE KINASE/ KINASE |
AT1G71860 | Experimentalprotein complementation assay | FSW = 0.0283
| Unknown | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
AT5G54430 | Experimentalbiochemicalin vitro | FSW = 0.1714
| Unknown | UNIVERSAL STRESS PROTEIN (USP) FAMILY PROTEIN |
AT1G10210 | Experimentaltwo hybrid | FSW = 0.1846
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT2G40180 | Experimentaltwo hybridprotein complementation assay | FSW = 0.0969
| Unknown | ATHPP2C5 CATALYTIC/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G55270 | Experimentaltwo hybrid | FSW = 0.0969
| Unknown | MKP1 (MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1) MAP KINASE TYROSINE/SERINE/THREONINE PHOSPHATASE |
AT4G31300 | Predictedtwo hybrid | FSW = 0.0141
| Unknown | PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G01370 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.3239
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT4G29810 | Predictedin vitroin vivotwo hybridShared biological functionCo-expression | FSW = 0.1636
| Unknown | ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP KINASE KINASE/ KINASE |
AT1G06390 | PredictedPhylogenetic profile method | FSW = 0.4493
| Unknown | GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1) GLYCOGEN SYNTHASE KINASE 3/ KINASE |
AT4G18710 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.5953
| Unknown | BIN2 (BRASSINOSTEROID-INSENSITIVE 2) GLYCOGEN SYNTHASE KINASE 3/ KINASE/ PROTEIN KINASE |
AT1G18040 | PredictedPhylogenetic profile method | FSW = 0.1592
| Unknown | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT4G26070 | Predictedtwo hybridtwo hybridin vivoin vivoin vitroin vitroin vitroin vivotwo hybridShared biological functionCo-expression | FSW = 0.1408
| Unknown | MEK1 (MAP KINASE/ ERK KINASE 1) MAP KINASE KINASE/ KINASE/ PROTEIN BINDING |
AT5G50260 | Predictedin vivo | FSW = 0.0190
| Unknown | CYSTEINE PROTEINASE PUTATIVE |
AT4G36450 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7298
| Unknown | ATMPK14 (MITOGEN-ACTIVATED PROTEIN KINASE 14) MAP KINASE/ KINASE |
AT1G59580 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.2717
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT2G46070 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2561
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
AT3G59790 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3451
| Unknown | ATMPK10 MAP KINASE/ KINASE |
AT1G07880 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3840
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT2G18170 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6255
| Unknown | ATMPK7 (ARABIDOPSIS THALIANA MAP KINASE 7) MAP KINASE/ KINASE |
AT2G43790 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.4232
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
AT3G05840 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.6106
| Unknown | ATSK12 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G30980 | PredictedPhylogenetic profile method | FSW = 0.4225
| Unknown | ASKDZETA (ARABIDOPSIS SHAGGY-RELATED PROTEIN KINASE DZETA) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G14640 | PredictedPhylogenetic profile method | FSW = 0.5828
| Unknown | SK13 (SHAGGY-LIKE KINASE 13) ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G26751 | PredictedPhylogenetic profile method | FSW = 0.4330
| Unknown | ATSK11 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454