Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT3G46010 - ( ADF1 (ACTIN DEPOLYMERIZING FACTOR 1) actin binding )

22 Proteins interacs with AT3G46010
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G31200

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3853

Class C:

cytoskeleton

ADF6 (ACTIN DEPOLYMERIZING FACTOR 6) ACTIN BINDING
AT2G16700

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6095

Class C:

cytoskeleton

ADF5 (ACTIN DEPOLYMERIZING FACTOR 5) ACTIN BINDING
AT2G21170

Predicted

in vivo

Affinity Capture-MS

FSW = 0.0291

Unknown

TIM (TRIOSEPHOSPHATE ISOMERASE) CATALYTIC/ TRIOSE-PHOSPHATE ISOMERASE
AT2G37020

Predicted

two hybrid

FSW = 0.0989

Unknown

DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT3G46000

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6553

Unknown

ADF2 (ACTIN DEPOLYMERIZING FACTOR 2) ACTIN BINDING
AT5G59880

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.5675

Unknown

ADF3 (ACTIN DEPOLYMERIZING FACTOR 3) ACTIN BINDING
AT3G12110

Predicted

two hybrid

FSW = 0.0477

Unknown

ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G37620

Predicted

Affinity Capture-MS

in vitro

two hybrid

FSW = 0.1505

Unknown

ACT1 (ACTIN 1) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G79920

Predicted

Affinity Capture-MS

in vitro

FSW = 0.0407

Unknown

ATP BINDING
AT3G53750Predicted

two hybrid

FSW = 0.2333

Unknown

ACT3 (ACTIN 3) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G46520

Predicted

Affinity Capture-MS

in vivo

two hybrid

FSW = 0.1552

Unknown

ACT12 (ACTIN-12) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G60440

Predicted

two hybrid

FSW = 0.2308

Unknown

ATPANK1 (PANTOTHENATE KINASE 1) PANTOTHENATE KINASE
AT3G54170

Predicted

two hybrid

FSW = 0.0814

Unknown

ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37) PROTEIN BINDING
AT3G23610

Predicted

in vivo

Affinity Capture-MS

FSW = 0.1067

Unknown

DUAL SPECIFICITY PROTEIN PHOSPHATASE (DSPTP1)
AT2G21270

Predicted

two hybrid

FSW = 0.0337

Unknown

UBIQUITIN FUSION DEGRADATION UFD1 FAMILY PROTEIN
AT5G59890

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4465

Unknown

ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING
AT4G25590

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6857

Unknown

ADF7 (ACTIN DEPOLYMERIZING FACTOR 7) ACTIN BINDING
AT5G52360

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6857

Unknown

ADF10 (ACTIN DEPOLYMERIZING FACTOR 10) ACTIN BINDING
AT4G00680

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6857

Unknown

ADF8 (ACTIN DEPOLYMERIZING FACTOR 8) ACTIN BINDING
AT1G01750

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4268

Unknown

ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) ACTIN BINDING
AT3G45990

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6553

Unknown

ACTIN-DEPOLYMERIZING FACTOR PUTATIVE
AT4G34970

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6857

Unknown

ADF9 (ACTIN DEPOLYMERIZING FACTOR 9) ACTIN BINDING

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454