Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G46090 - ( ZAT7 nucleic acid binding / transcription factor/ zinc ion binding )
44 Proteins interacs with AT3G46090| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G27090
   | Experimental | FSW = 0.0067
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14B) |
| AT3G16640
| Experimental | FSW = 0.0200
| Unknown | TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) |
| AT1G60160
| Experimental | FSW = 0.0193
| Unknown | POTASSIUM TRANSPORTER FAMILY PROTEIN |
| AT1G53850
| Experimental | FSW = 0.0092
| Unknown | PAE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT1G02305
| Experimental | FSW = 0.0243
| Unknown | CATHEPSIN B-LIKE CYSTEINE PROTEASE PUTATIVE |
| AT2G13360
| Experimental | FSW = 0.0193
| Unknown | AGT (ALANINEGLYOXYLATE AMINOTRANSFERASE) ALANINE-GLYOXYLATE TRANSAMINASE/ SERINE-GLYOXYLATE TRANSAMINASE/ SERINE-PYRUVATE TRANSAMINASE |
| AT3G14420
| Experimental | FSW = 0.0095
| Unknown | (S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE |
| AT2G22780
| Experimental | FSW = 0.0122
| Unknown | PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
| AT1G67090
| Experimental | FSW = 0.0200
| Unknown | RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) COPPER ION BINDING / RIBULOSE-BISPHOSPHATE CARBOXYLASE |
| AT5G54770
| Experimental | FSW = 0.0076
| Unknown | THI1 PROTEIN HOMODIMERIZATION |
| AT4G00570
| Experimental | FSW = 0.0207
| Unknown | MALATE OXIDOREDUCTASE PUTATIVE |
| AT5G14780
| Experimental | FSW = 0.0200
| Unknown | FDH (FORMATE DEHYDROGENASE) NAD OR NADH BINDING / BINDING / CATALYTIC/ COFACTOR BINDING / OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
| AT5G38430
| Experimental | FSW = 0.0193
| Unknown | RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1B / RUBISCO SMALL SUBUNIT 1B (RBCS-1B) (ATS1B) |
| AT2G47400
| Experimental | FSW = 0.0681
| Unknown | CP12-1 |
| AT1G29930
| Experimental | FSW = 0.0200
| Unknown | CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1) CHLOROPHYLL BINDING |
| AT5G51070
| Experimental | FSW = 0.0227
| Unknown | ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT2G06050
| Experimental | FSW = 0.0426
| Unknown | OPR3 (OPDA-REDUCTASE 3) 12-OXOPHYTODIENOATE REDUCTASE |
| AT2G05520
| Experimental | FSW = 0.0203
| Unknown | GRP-3 (GLYCINE-RICH PROTEIN 3) |
| AT3G20060
| Experimental | FSW = 0.0213
| Unknown | UBC19 (UBIQUITIN-CONJUGATING ENZYME19) UBIQUITIN-PROTEIN LIGASE |
| AT1G02580
| Experimental | FSW = 0.0340
| Unknown | MEA (MEDEA) SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
| AT1G09140
| Experimental | FSW = 0.0229
| Unknown | SF2/ASF-LIKE SPLICING MODULATOR (SRP30) |
| AT3G56400
| Experimental | FSW = 0.0189
| Unknown | WRKY70 TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR |
| AT2G02050
| Experimental | FSW = 0.0200
| Unknown | NADH-UBIQUINONE OXIDOREDUCTASE B18 SUBUNIT PUTATIVE |
| AT2G25670
| Experimental | FSW = 0.0851
| Unknown | UNKNOWN PROTEIN |
| AT5G13070
| Experimental | FSW = 0.0193
| Unknown | MSF1-LIKE FAMILY PROTEIN |
| AT1G24764
| Experimental | FSW = 0.0189
| Unknown | ATMAP70-2 (MICROTUBULE-ASSOCIATED PROTEINS 70-2) MICROTUBULE BINDING |
| AT3G16190
| Experimental | FSW = 0.0486
| Unknown | ISOCHORISMATASE HYDROLASE FAMILY PROTEIN |
| AT1G24822
| Experimental | FSW = 0.0681
| Unknown | UNKNOWN PROTEIN |
| AT4G27130
| Experimental | FSW = 0.0026
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
| AT5G23660
| Experimental | FSW = 0.0851
| Unknown | MTN3 (ARABIDOPSIS HOMOLOG OF MEDICAGO TRUNCATULA MTN3) |
| AT3G48530
| Experimental | FSW = 0.0200
| Unknown | KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1) |
| AT5G49000
| Experimental | FSW = 0.0207
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CYCLIN-LIKE F-BOX (INTERPROIPR001810) GALACTOSE OXIDASE/KELCH BETA-PROPELLER (INTERPROIPR011043) KELCH REPEAT TYPE 1 (INTERPROIPR006652) KELCH RELATED (INTERPROIPR013089) KELCH-TYPE BETA PROPELLER (INTERPROIPR015915) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN (TAIRAT4G395501) HAS 1294 BLAST HITS TO 1195 PROTEINS IN 89 SPECIES ARCHAE - 4 BACTERIA - 28 METAZOA - 685 FUNGI - 4 PLANTS - 527 VIRUSES - 11 OTHER EUKARYOTES - 35 (SOURCE NCBI BLINK) |
| AT5G07140
| Experimental | FSW = 0.0567
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT5G06060
| Experimental | FSW = 0.0085
| Unknown | TROPINONE REDUCTASE PUTATIVE / TROPINE DEHYDROGENASE PUTATIVE |
| AT2G04795
| Experimental | FSW = 0.0851
| Unknown | UNKNOWN PROTEIN |
| AT2G44065
| Experimental | FSW = 0.0081
| Unknown | RIBOSOMAL PROTEIN L2 FAMILY PROTEIN |
| AT4G05320
| Experimental | FSW = 0.0040
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
| AT1G19920
| Experimental | FSW = 0.0426
| Unknown | APS2 SULFATE ADENYLYLTRANSFERASE (ATP) |
| AT4G29400
| Experimental | FSW = 0.0189
| Unknown | UNKNOWN PROTEIN |
| AT5G46420
| Experimental | FSW = 0.0189
| Unknown | 16S RRNA PROCESSING PROTEIN RIMM FAMILY |
| AT4G25170
| Experimental | FSW = 0.0189
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED CONSERVED PROTEIN UCP012943 (INTERPROIPR016606) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G614901) HAS 87 BLAST HITS TO 86 PROTEINS IN 16 SPECIES ARCHAE - 0 BACTERIA - 4 METAZOA - 15 FUNGI - 3 PLANTS - 63 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK) |
| AT5G26880
| Experimental | FSW = 0.0567
| Unknown | TRNA/RRNA METHYLTRANSFERASE (SPOU) FAMILY PROTEIN |
| AT5G59820
| PredictedPhylogenetic profile method | FSW = 0.1250
| Unknown | RHL41 (RESPONSIVE TO HIGH LIGHT 41) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
| AT3G46070
| PredictedPhylogenetic profile method | FSW = 0.0399
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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