Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G46900 - ( COPT2 copper ion transmembrane transporter/ high affinity copper ion transmembrane transporter )
72 Proteins interacs with AT3G46900Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | PredictedAffinity Capture-MS | FSW = 0.2298
| Class C:plasma membrane | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT4G16720 | PredictedAffinity Capture-MS | FSW = 0.0085
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L15 (RPL15A) |
AT5G61520 | PredictedAffinity Capture-MS | FSW = 0.0133
| Class C:plasma membrane | HEXOSE TRANSPORTER PUTATIVE |
AT3G09820 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.4365
| Class C:plasma membrane | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT3G11510 | PredictedAffinity Capture-MS | FSW = 0.0058
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
AT4G28950 | PredictedAffinity Capture-MS | FSW = 0.0178
| Class C:plasma membrane | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT4G08690 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3613
| Class C:plasma membrane | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT1G63110 | PredictedAffinity Capture-MS | FSW = 0.2532
| Class C:plasma membrane | CELL DIVISION CYCLE PROTEIN-RELATED |
AT5G24380 | PredictedAffinity Capture-MS | FSW = 0.0275
| Class C:plasma membrane | YSL2 (YELLOW STRIPE LIKE 2) OLIGOPEPTIDE TRANSPORTER |
AT5G45380 | PredictedAffinity Capture-MS | FSW = 0.3149
| Class C:plasma membrane | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
AT3G11730 | PredictedAffinity Capture-MS | FSW = 0.0154
| Class C:plasma membrane | ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
AT2G44690 | Predictedtwo hybrid | FSW = 0.0132
| Class C:plasma membrane | ARAC9 GTP BINDING |
AT4G11380 | PredictedAffinity Capture-MS | FSW = 0.0095
| Class C:plasma membrane | BETA-ADAPTIN PUTATIVE |
AT5G22770 | PredictedAffinity Capture-MS | FSW = 0.0132
| Class C:plasma membrane | ALPHA-ADR (ALPHA-ADAPTIN) BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT5G37640 | PredictedAffinity Capture-MS | FSW = 0.0112
| Unknown | UBQ9 PROTEIN BINDING |
AT1G14010 | PredictedAffinity Capture-MS | FSW = 0.3111
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G26590 | Predictedbiochemical | FSW = 0.0238
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT3G59280 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0898
| Unknown | TXR1 (THAXTOMIN A RESISTANT 1) |
AT2G04940 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1733
| Unknown | SCRAMBLASE-RELATED |
AT3G23340 | PredictedAffinity Capture-MS | FSW = 0.0226
| Unknown | CKL10 (CASEIN KINASE I-LIKE 10) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G23310 | PredictedAffinity Capture-MS | FSW = 0.0389
| Unknown | GGT1 (GLUTAMATEGLYOXYLATE AMINOTRANSFERASE) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT3G54660 | PredictedAffinity Capture-MS | FSW = 0.1339
| Unknown | GR (GLUTATHIONE REDUCTASE) ATP BINDING / GLUTATHIONE-DISULFIDE REDUCTASE |
AT5G15450 | PredictedAffinity Capture-MS | FSW = 0.1199
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G18870 | PredictedAffinity Capture-MS | FSW = 0.2760
| Unknown | ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE |
AT4G09570 | PredictedAffinity Capture-MS | FSW = 0.0115
| Unknown | CPK4 CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE |
AT1G06960 | PredictedAffinity Capture-MS | FSW = 0.0777
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT5G59960 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4283
| Unknown | UNKNOWN PROTEIN |
AT1G75560 | PredictedAffinity Capture-MS | FSW = 0.0169
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT4G13980 | Predictedbiochemical | FSW = 0.0152
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT1G30810 | PredictedAffinity Capture-MS | FSW = 0.3936
| Unknown | TRANSCRIPTION FACTOR |
AT3G08980 | PredictedAffinity Capture-MS | FSW = 0.3807
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT3G09590 | PredictedAffinity Capture-MS | FSW = 0.0267
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G66590 | PredictedAffinity Capture-MS | FSW = 0.0291
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT1G62800 | PredictedAffinity Capture-MS | FSW = 0.0062
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT1G05180 | PredictedAffinity Capture-MS | FSW = 0.0096
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT3G22880 | PredictedAffinity Capture-MS | FSW = 0.0109
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G17190 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1369
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G06790 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2743
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G10350 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2681
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G17470 | PredictedAffinity Capture-MS | FSW = 0.0164
| Unknown | ATDRG1 (ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1) GTP BINDING / GTPASE |
AT1G20696 | PredictedAffinity Capture-MS | FSW = 0.0044
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G21370 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1853
| Unknown | UNKNOWN PROTEIN |
AT1G67300 | PredictedAffinity Capture-MS | FSW = 0.0588
| Unknown | HEXOSE TRANSPORTER PUTATIVE |
AT1G68200 | PredictedAffinity Capture-MS | FSW = 0.0287
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT1G74250 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.4196
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G80530 | PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | NODULIN FAMILY PROTEIN |
AT2G20410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4492
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT2G25100 | PredictedAffinity Capture-MS | FSW = 0.0082
| Unknown | RIBONUCLEASE HII FAMILY PROTEIN |
AT2G28720 | PredictedAffinity Capture-MS | FSW = 0.0108
| Unknown | HISTONE H2B PUTATIVE |
AT2G29680 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4424
| Unknown | CDC6 (CELL DIVISION CONTROL 6) |
AT2G29940 | PredictedAffinity Capture-MS | FSW = 0.4723
| Unknown | PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G05760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3149
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G45190 | PredictedAffinity Capture-MS | FSW = 0.0182
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
AT1G05830 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3167
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT1G18550 | PredictedAffinity Capture-MS | FSW = 0.1721
| Unknown | ATP BINDING / MICROTUBULE MOTOR |
AT1G54560 | Predictedbiochemical | FSW = 0.0061
| Unknown | XIE MOTOR/ PROTEIN BINDING |
AT3G53880 | PredictedCo-purificationAffinity Capture-MS | FSW = 0.3001
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G00810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3927
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B) |
AT4G29910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.4583
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
AT4G31770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4938
| Unknown | CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN |
AT5G53940 | PredictedSynthetic Rescue | FSW = 0.0082
| Unknown | YIPPEE FAMILY PROTEIN |
AT3G52590 | PredictedAffinity Capture-MS | FSW = 0.3149
| Unknown | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G10480 | PredictedAffinity Capture-MS | FSW = 0.0260
| Unknown | NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA CHAIN PROTEIN PUTATIVE / ALPHA-NAC PUTATIVE |
AT4G14670 | PredictedAffinity Capture-MS | FSW = 0.0231
| Unknown | CLPB2 ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G33070 | PredictedAffinity Capture-MS | FSW = 0.0204
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT5G06150 | PredictedAffinity Capture-MS | FSW = 0.0781
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G08600 | PredictedAffinity Capture-MS | FSW = 0.0139
| Unknown | U3 RIBONUCLEOPROTEIN (UTP) FAMILY PROTEIN |
AT5G16960 | PredictedAffinity Capture-MS | FSW = 0.3493
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G39420 | PredictedAffinity Capture-MS | FSW = 0.0139
| Unknown | CDC2CAT (ARABIDOPSIS THALIANA CDC2C) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G45990 | PredictedAffinity Capture-MS | FSW = 0.0282
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT5G49970 | PredictedAffinity Capture-MS | FSW = 0.1444
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G59890 | PredictedAffinity Capture-MS | FSW = 0.2547
| Unknown | ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454