Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G47120 - ( RNA recognition motif (RRM)-containing protein )
52 Proteins interacs with AT3G47120Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G23190 | PredictedAffinity Capture-MS | FSW = 0.0401
| Unknown | PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE |
AT4G13940 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0468
| Unknown | MEE58 (MATERNAL EFFECT EMBRYO ARREST 58) ADENOSYLHOMOCYSTEINASE/ COPPER ION BINDING |
AT3G23810 | PredictedAffinity Capture-MS | FSW = 0.0536
| Unknown | SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2) ADENOSYLHOMOCYSTEINASE/ BINDING / CATALYTIC |
AT1G16240 | PredictedAffinity Capture-Western | FSW = 0.0054
| Unknown | SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR |
AT5G45130 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0260
| Unknown | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT1G65540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1452
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT1G09770 | PredictedAffinity Capture-MS | FSW = 0.0408
| Unknown | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G64270 | PredictedAffinity Capture-MS | FSW = 0.0568
| Unknown | SPLICING FACTOR PUTATIVE |
AT2G31170 | PredictedAffinity Capture-MS | FSW = 0.0074
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT5G06290 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT5G51820 | PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT2G33340 | PredictedAffinity Capture-MSCo-purification | FSW = 0.0402
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G18870 | PredictedAffinity Capture-MS | FSW = 0.0220
| Unknown | ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE |
AT4G38740 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0201
| Unknown | ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G16600 | PredictedAffinity Capture-MS | FSW = 0.0288
| Unknown | ROC3 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G63680 | PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | PYRUVATE KINASE PUTATIVE |
AT1G70730 | Predictedinteraction prediction | FSW = 0.0401
| Unknown | PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE |
AT5G26340 | PredictedProtein-peptide | FSW = 0.0089
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G67270 | Predictedsynthetic growth defect | FSW = 0.0350
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT2G18510 | PredictedAffinity Capture-MS | FSW = 0.1240
| Unknown | EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G50670 | PredictedAffinity Capture-MS | FSW = 0.0181
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G12810 | PredictedPhenotypic Enhancement | FSW = 0.0492
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G13445 | Predictedinteraction predictiontwo hybridAffinity Capture-Westerninterologs mapping | FSW = 0.0264
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT1G04510 | PredictedAffinity Capture-MSCo-purification | FSW = 0.0407
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G36740 | PredictedPhenotypic Enhancement | FSW = 0.0287
| Unknown | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT1G55520 | Predictedtwo hybrid | FSW = 0.0151
| Unknown | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT2G17270 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0695
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT3G47690 | Predictedsynthetic growth defect | FSW = 0.0359
| Unknown | ATEB1A MICROTUBULE BINDING |
AT3G03950 | PredictedAffinity Capture-MS | FSW = 0.0238
| Unknown | PROTEIN BINDING |
AT5G49550 | Predictedtwo hybrid | FSW = 0.0193
| Unknown | UNKNOWN PROTEIN |
AT1G07170 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1162
| Unknown | LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PHF5-LIKE (INTERPROIPR005345) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G300001) HAS 292 BLAST HITS TO 292 PROTEINS IN 142 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 110 FUNGI - 75 PLANTS - 47 VIRUSES - 0 OTHER EUKARYOTES - 60 (SOURCE NCBI BLINK) |
AT1G66530 | PredictedAffinity Capture-MS | FSW = 0.0364
| Unknown | ARGINYL-TRNA SYNTHETASE PUTATIVE / ARGININE--TRNA LIGASE PUTATIVE |
AT1G66810 | PredictedAffinity Capture-MS | FSW = 0.0162
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT2G47570 | PredictedAffinity Capture-MS | FSW = 0.0154
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G12490 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.1846
| Unknown | CYSTEINE PROTEASE INHIBITOR PUTATIVE / CYSTATIN PUTATIVE |
AT3G17630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2440
| Unknown | ATCHX19 (CATION/H+ EXCHANGER 19) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT1G34340 | PredictedAffinity Capture-MS | FSW = 0.0447
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
AT1G50490 | PredictedPhenotypic Enhancement | FSW = 0.0402
| Unknown | UBC20 (UBIQUITIN-CONJUGATING ENZYME 20) UBIQUITIN-PROTEIN LIGASE |
AT1G52740 | PredictedPhenotypic Enhancement | FSW = 0.0485
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0248
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G19160 | PredictedAffinity Capture-MS | FSW = 0.0750
| Unknown | UNKNOWN PROTEIN |
AT3G22590 | PredictedSynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.0470
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT4G00810 | Predictedtwo hybrid | FSW = 0.0269
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B) |
AT4G21660 | PredictedAffinity Capture-MS | FSW = 0.0843
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.0228
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G44635 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0197
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT3G55220 | PredictedAffinity Capture-MS | FSW = 0.0843
| Unknown | SPLICING FACTOR PUTATIVE |
AT4G38330 | Predictedinterologs mapping | FSW = 0.0510
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S HLY-III RELATED (INTERPROIPR004254) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G382901) HAS 8 BLAST HITS TO 8 PROTEINS IN 1 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 8 VIRUSES - 0 OTHER EUKARYOTES - 0 (SOURCE NCBI BLINK) |
AT5G22030 | PredictedAffinity Capture-MS | FSW = 0.0193
| Unknown | UBP8 (UBIQUITIN-SPECIFIC PROTEASE 8) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT5G46180 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0116
| Unknown | DELTA-OAT ORNITHINE-OXO-ACID TRANSAMINASE |
AT5G59040 | PredictedAffinity Capture-MS | FSW = 0.0153
| Unknown | COPT3 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT2G26060 | PredictedGene fusion method | FSW = 0.0081
| Unknown | EMB1345 (EMBRYO DEFECTIVE 1345) NUCLEOTIDE BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454