Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G47300 - ( SELT (SELT-LIKE PROTEIN PRECURSOR) selenium binding )

17 Proteins interacs with AT3G47300
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G15090

Predicted

Affinity Capture-MS

FSW = 0.0383

Unknown

VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL
AT5G58640

Predicted

Phylogenetic profile method

FSW = 0.0157

Unknown

SELENOPROTEIN-RELATED
AT5G26340

Predicted

two hybrid

Affinity Capture-Western

Colocalization

co-fractionation

Co-fractionation

interologs mapping

Co-purification

FSW = 0.1082

Unknown

MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT3G53960

Predicted

Synthetic Rescue

two hybrid

two hybrid

Synthetic Lethality

FSW = 0.3091

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT2G44510

Predicted

Colocalization

FSW = 0.1359

Unknown

P21CIP1-BINDING PROTEIN-RELATED
AT5G24090

Predicted

Affinity Capture-MS

Affinity Capture-MS

two hybrid

co-fractionation

Co-fractionation

FSW = 0.2430

Unknown

ACIDIC ENDOCHITINASE (CHIB1)
AT3G06100

Predicted

interologs mapping

Synthetic Rescue

Reconstituted Complex

FSW = 0.1143

Unknown

NIP71 (NOD26-LIKE INTRINSIC PROTEIN 71) WATER CHANNEL
AT1G10810

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0333

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT1G31170

Predicted

Co-purification

FSW = 0.1348

Unknown

SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS
AT2G34250

Predicted

two hybrid

co-fractionation

Co-fractionation

Co-purification

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.2259

Unknown

PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE
AT1G55060

Predicted

Colocalization

Colocalization

Reconstituted Complex

Colocalization

FSW = 0.1034

Unknown

UBQ12 (UBIQUITIN 12) PROTEIN BINDING
AT1G74810

Predicted

Synthetic Lethality

FSW = 0.2222

Unknown

BOR5 ANION EXCHANGER
AT2G40930

Predicted

Affinity Capture-MS

FSW = 0.4000

Unknown

UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5) UBIQUITIN-SPECIFIC PROTEASE
AT3G61740

Predicted

Co-purification

Colocalization

Co-purification

co-fractionation

Co-fractionation

FSW = 0.2704

Unknown

SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G14000

Predicted

biochemical

synthetic growth defect

FSW = 0.1538

Unknown

UNKNOWN PROTEIN
AT5G55180

Predicted

Co-purification

Colocalization

Co-purification

FSW = 0.7269

Unknown

GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT5G60550

Predicted

Synthetic Lethality

FSW = 0.2095

Unknown

GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) KINASE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454