Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G47960 - ( proton-dependent oligopeptide transport (POT) family protein )
31 Proteins interacs with AT3G47960Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09440 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1026
| Class C:plasma membrane | HEAT SHOCK COGNATE 70 KDA PROTEIN 3 (HSC70-3) (HSP70-3) |
AT1G54270 | PredictedAffinity Capture-MS | FSW = 0.0051
| Class C:plasma membrane | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT5G62880 | PredictedAffinity Capture-MS | FSW = 0.0529
| Class C:plasma membrane | ARAC10 GTP BINDING |
AT5G58640 | PredictedAffinity Capture-MS | FSW = 0.0335
| Class C:plasma membrane | SELENOPROTEIN-RELATED |
AT1G76810 | PredictedSynthetic Lethality | FSW = 0.0317
| Class C:plasma membrane | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN |
AT4G01840 | PredictedReconstituted ComplexSynthetic Lethality | FSW = 0.3664
| Unknown | KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5) OUTWARD RECTIFIER POTASSIUM CHANNEL |
AT5G16150 | PredictedAffinity Capture-MS | FSW = 0.0370
| Unknown | PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G21640 | PredictedAffinity Capture-MS | FSW = 0.0636
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT5G63980 | PredictedAffinity Capture-MS | FSW = 0.0541
| Unknown | SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE |
AT1G06960 | PredictedAffinity Capture-MS | FSW = 0.0098
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT1G62820 | PredictedAffinity Capture-MS | FSW = 0.0124
| Unknown | CALMODULIN PUTATIVE |
AT2G36170 | PredictedSynthetic LethalityCo-purification | FSW = 0.2676
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT1G09060 | PredictedAffinity Capture-MS | FSW = 0.0741
| Unknown | TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN |
AT1G13560 | PredictedAffinity Capture-MS | FSW = 0.0447
| Unknown | AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS |
AT1G64880 | PredictedAffinity Capture-MS | FSW = 0.0530
| Unknown | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
AT4G25780 | PredictedAffinity Capture-MS | FSW = 0.0474
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G10330 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0443
| Unknown | HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE |
AT1G60680 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0279
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G19540 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0573
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G35530 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1353
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G52500 | PredictedSynthetic Lethality | FSW = 0.0138
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT1G70290 | PredictedAffinity Capture-MS | FSW = 0.0151
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT3G59540 | PredictedSynthetic Lethality | FSW = 0.0122
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G18593 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2094
| Unknown | DUAL SPECIFICITY PROTEIN PHOSPHATASE-RELATED |
AT5G13150 | PredictedAffinity Capture-MSinterologs mapping | FSW = 0.4451
| Unknown | ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING |
AT5G16750 | PredictedAffinity Capture-MS | FSW = 0.0426
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
AT5G24670 | PredictedAffinity Capture-MS | FSW = 0.0563
| Unknown | CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
AT5G44740 | PredictedAffinity Capture-MS | FSW = 0.0180
| Unknown | POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE |
AT5G14180 | PredictedAffinity Capture-MS | FSW = 0.0113
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G56670 | PredictedAffinity Capture-MS | FSW = 0.0580
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30C) |
AT1G18880 | PredictedPhylogenetic profile method | FSW = 0.0174
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454