Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G47960 - ( proton-dependent oligopeptide transport (POT) family protein )

31 Proteins interacs with AT3G47960
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G09440

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1026

Class C:

plasma membrane

HEAT SHOCK COGNATE 70 KDA PROTEIN 3 (HSC70-3) (HSP70-3)
AT1G54270

Predicted

Affinity Capture-MS

FSW = 0.0051

Class C:

plasma membrane

EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT5G62880

Predicted

Affinity Capture-MS

FSW = 0.0529

Class C:

plasma membrane

ARAC10 GTP BINDING
AT5G58640

Predicted

Affinity Capture-MS

FSW = 0.0335

Class C:

plasma membrane

SELENOPROTEIN-RELATED
AT1G76810Predicted

Synthetic Lethality

FSW = 0.0317

Class C:

plasma membrane

EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN
AT4G01840

Predicted

Reconstituted Complex

Synthetic Lethality

FSW = 0.3664

Unknown

KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5) OUTWARD RECTIFIER POTASSIUM CHANNEL
AT5G16150

Predicted

Affinity Capture-MS

FSW = 0.0370

Unknown

PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G21640

Predicted

Affinity Capture-MS

FSW = 0.0636

Unknown

NADK2 NAD+ KINASE/ CALMODULIN BINDING
AT5G63980

Predicted

Affinity Capture-MS

FSW = 0.0541

Unknown

SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE
AT1G06960

Predicted

Affinity Capture-MS

FSW = 0.0098

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE
AT1G62820

Predicted

Affinity Capture-MS

FSW = 0.0124

Unknown

CALMODULIN PUTATIVE
AT2G36170Predicted

Synthetic Lethality

Co-purification

FSW = 0.2676

Unknown

UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A)
AT1G09060

Predicted

Affinity Capture-MS

FSW = 0.0741

Unknown

TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN
AT1G13560

Predicted

Affinity Capture-MS

FSW = 0.0447

Unknown

AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS
AT1G64880

Predicted

Affinity Capture-MS

FSW = 0.0530

Unknown

RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT4G25780

Predicted

Affinity Capture-MS

FSW = 0.0474

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT5G10330Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0443

Unknown

HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE
AT1G60680

Predicted

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0279

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT2G19540

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0573

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G35530Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1353

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G52500

Predicted

Synthetic Lethality

FSW = 0.0138

Unknown

ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE
AT1G70290

Predicted

Affinity Capture-MS

FSW = 0.0151

Unknown

ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT3G59540Predicted

Synthetic Lethality

FSW = 0.0122

Unknown

60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT4G18593

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2094

Unknown

DUAL SPECIFICITY PROTEIN PHOSPHATASE-RELATED
AT5G13150

Predicted

Affinity Capture-MS

interologs mapping

FSW = 0.4451

Unknown

ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING
AT5G16750

Predicted

Affinity Capture-MS

FSW = 0.0426

Unknown

TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING
AT5G24670

Predicted

Affinity Capture-MS

FSW = 0.0563

Unknown

CATALYTIC/ HYDROLASE/ ZINC ION BINDING
AT5G44740

Predicted

Affinity Capture-MS

FSW = 0.0180

Unknown

POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE
AT5G14180

Predicted

Affinity Capture-MS

FSW = 0.0113

Unknown

MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC
AT5G56670

Predicted

Affinity Capture-MS

FSW = 0.0580

Unknown

40S RIBOSOMAL PROTEIN S30 (RPS30C)
AT1G18880

Predicted

Phylogenetic profile method

FSW = 0.0174

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454