Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G48040 - ( ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10) GTP binding / GTPase )
18 Proteins interacs with AT3G48040| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G38430
   | Experimentalbiochemical | FSW = 0.2439
| Class A:plasma membrane | ROPGEF1 RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ PROTEIN BINDING |
| AT3G48100
| Experimentaltwo hybrid | FSW = 0.0293
| Unknown | ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
| AT2G44610
| PredictedGene fusion methodCo-expression | FSW = 0.0075
| Class C:plasma membrane | RAB6A GTP BINDING / PROTEIN BINDING |
| AT5G06680
| PredictedAffinity Capture-MS | FSW = 0.0476
| Class C:plasma membrane | SPC98 (SPINDLE POLE BODY COMPONENT 98) TUBULIN BINDING |
| AT5G62880
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1630
| Class C:plasma membrane | ARAC10 GTP BINDING |
| AT1G75840
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.2773
| Class C:plasma membrane | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
| AT4G28950
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.2068
| Class C:plasma membrane | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
| AT1G20090
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.2151
| Class C:plasma membrane | ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING |
| AT5G45970
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.2970
| Class C:plasma membrane | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
| AT2G44690
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.3667
| Class C:plasma membrane | ARAC9 GTP BINDING |
| AT4G35020
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1876
| Class C:plasma membrane | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
| AT4G35950
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.4246
| Class C:plasma membrane | ARAC6 (ARABIDOPSIS RAC-LIKE 6) GTP BINDING |
| AT3G51300
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2732
| Unknown | ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1) GTP BINDING / GTPASE ACTIVATING PROTEIN BINDING / GTPASE/ PROTEIN BINDING |
| AT2G17800
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.2780
| Unknown | ARAC1 GTP BINDING |
| AT3G44320
| PredictedAffinity Capture-MS | FSW = 0.0584
| Unknown | NIT3 (NITRILASE 3) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE |
| AT5G15240
| PredictedAffinity Capture-MS | FSW = 0.0679
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
| AT4G34450
| Predictedin vivo | FSW = 0.0568
| Unknown | COATOMER GAMMA-2 SUBUNIT PUTATIVE / GAMMA-2 COAT PROTEIN PUTATIVE / GAMMA-2 COP PUTATIVE |
| AT4G31480
| Predictedin vivo | FSW = 0.0898
| Unknown | COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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