Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT3G48470 - ( EMB2423 (EMBRYO DEFECTIVE 2423) )

38 Proteins interacs with AT3G48470
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G02090

Predicted

Phenotypic Enhancement

FSW = 0.0103

Unknown

MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE
AT5G05520

Predicted

Phenotypic Enhancement

FSW = 0.0245

Unknown

OUTER MEMBRANE OMP85 FAMILY PROTEIN
AT1G43170

Predicted

Phenotypic Enhancement

FSW = 0.0067

Unknown

ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G40810

Predicted

Phenotypic Enhancement

FSW = 0.0195

Unknown

CYTOCHROME C1 PUTATIVE
AT5G58060

Predicted

Phenotypic Enhancement

FSW = 0.0093

Unknown

YKT61
AT5G10450

Predicted

Phenotypic Enhancement

FSW = 0.0077

Unknown

GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
ATCG00480Predicted

Phenotypic Enhancement

FSW = 0.0244

Unknown

CHLOROPLAST-ENCODED GENE FOR BETA SUBUNIT OF ATP SYNTHASE
AT5G64270

Predicted

Phenotypic Enhancement

FSW = 0.0171

Unknown

SPLICING FACTOR PUTATIVE
AT3G15640

Predicted

Phenotypic Enhancement

FSW = 0.0780

Unknown

CYTOCHROME C OXIDASE FAMILY PROTEIN
AT4G26300

Predicted

Phenotypic Enhancement

FSW = 0.0244

Unknown

EMB1027 (EMBRYO DEFECTIVE 1027) ATP BINDING / AMINOACYL-TRNA LIGASE/ ARGININE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT2G33340

Predicted

Phenotypic Enhancement

FSW = 0.0119

Unknown

NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G17880

Predicted

Phenotypic Enhancement

FSW = 0.0145

Unknown

NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN / BTF3B-LIKE TRANSCRIPTION FACTOR PUTATIVE
AT5G50860

Predicted

Phenotypic Enhancement

FSW = 0.0224

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G24820

Predicted

Affinity Capture-MS

FSW = 0.0074

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7)
AT3G17590

Predicted

Phenotypic Enhancement

FSW = 0.0045

Unknown

BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING
AT4G20400

Predicted

Phenotypic Enhancement

FSW = 0.0156

Unknown

TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN
AT1G47640

Predicted

Phenotypic Enhancement

FSW = 0.0650

Unknown

UNKNOWN PROTEIN
AT3G28730

Predicted

Phenotypic Enhancement

FSW = 0.0044

Unknown

ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT4G21710

Predicted

Phenotypic Enhancement

FSW = 0.0102

Unknown

NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G20850

Predicted

Phenotypic Enhancement

FSW = 0.0074

Unknown

ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT1G17720

Predicted

Phenotypic Enhancement

FSW = 0.0078

Unknown

ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT1G29870

Predicted

Phenotypic Enhancement

FSW = 0.0557

Unknown

TRNA SYNTHETASE CLASS II (G H P AND S) FAMILY PROTEIN
AT1G32340

Predicted

Phenotypic Enhancement

FSW = 0.0488

Unknown

NHL8 PROTEIN BINDING / ZINC ION BINDING
AT2G27285

Predicted

Phenotypic Enhancement

FSW = 0.0976

Unknown

UNKNOWN PROTEIN
AT2G27600

Predicted

Phenotypic Enhancement

FSW = 0.0087

Unknown

SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G27060

Predicted

Phenotypic Enhancement

FSW = 0.0130

Unknown

TSO2 (TSO MEANING UGLY IN CHINESE) OXIDOREDUCTASE/ RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE/ TRANSITION METAL ION BINDING
AT3G43250

Predicted

Phenotypic Enhancement

FSW = 0.0279

Unknown

CELL CYCLE CONTROL PROTEIN-RELATED
AT3G59600

Predicted

Phenotypic Enhancement

FSW = 0.0245

Unknown

NRPB8B DNA-DIRECTED RNA POLYMERASE
AT4G02220

Predicted

Phenotypic Enhancement

FSW = 0.0245

Unknown

ZINC FINGER (MYND TYPE) FAMILY PROTEIN / PROGRAMMED CELL DEATH 2 C-TERMINAL DOMAIN-CONTAINING PROTEIN
AT4G14147

Predicted

Phenotypic Enhancement

FSW = 0.0260

Unknown

ARPC4 PROTEIN BINDING
AT5G08415

Predicted

Phenotypic Enhancement

FSW = 0.0244

Unknown

LIPOIC ACID SYNTHASE FAMILY PROTEIN
AT5G14050

Predicted

Phenotypic Enhancement

FSW = 0.0066

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G17270

Predicted

Phenotypic Enhancement

FSW = 0.0262

Unknown

TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT5G18400

Predicted

Phenotypic Enhancement

FSW = 0.0234

Unknown

UNKNOWN PROTEIN
AT5G22950

Predicted

Phenotypic Enhancement

FSW = 0.0177

Unknown

VPS241
AT5G39930

Predicted

Phenotypic Enhancement

FSW = 0.0262

Unknown

CLPS5 (CLP1-SIMILAR PROTEIN 5)
AT5G48180

Predicted

Phenotypic Enhancement

FSW = 0.0256

Unknown

NSP5 (NITRILE SPECIFIER PROTEIN 5)
AT5G57280

Predicted

Phenotypic Enhancement

FSW = 0.0220

Unknown

METHYLTRANSFERASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454