Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G48470 - ( EMB2423 (EMBRYO DEFECTIVE 2423) )
38 Proteins interacs with AT3G48470Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G02090 | PredictedPhenotypic Enhancement | FSW = 0.0103
| Unknown | MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE |
AT5G05520 | PredictedPhenotypic Enhancement | FSW = 0.0245
| Unknown | OUTER MEMBRANE OMP85 FAMILY PROTEIN |
AT1G43170 | PredictedPhenotypic Enhancement | FSW = 0.0067
| Unknown | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G40810 | PredictedPhenotypic Enhancement | FSW = 0.0195
| Unknown | CYTOCHROME C1 PUTATIVE |
AT5G58060 | PredictedPhenotypic Enhancement | FSW = 0.0093
| Unknown | YKT61 |
AT5G10450 | PredictedPhenotypic Enhancement | FSW = 0.0077
| Unknown | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
ATCG00480 | PredictedPhenotypic Enhancement | FSW = 0.0244
| Unknown | CHLOROPLAST-ENCODED GENE FOR BETA SUBUNIT OF ATP SYNTHASE |
AT5G64270 | PredictedPhenotypic Enhancement | FSW = 0.0171
| Unknown | SPLICING FACTOR PUTATIVE |
AT3G15640 | PredictedPhenotypic Enhancement | FSW = 0.0780
| Unknown | CYTOCHROME C OXIDASE FAMILY PROTEIN |
AT4G26300 | PredictedPhenotypic Enhancement | FSW = 0.0244
| Unknown | EMB1027 (EMBRYO DEFECTIVE 1027) ATP BINDING / AMINOACYL-TRNA LIGASE/ ARGININE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT2G33340 | PredictedPhenotypic Enhancement | FSW = 0.0119
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G17880 | PredictedPhenotypic Enhancement | FSW = 0.0145
| Unknown | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN / BTF3B-LIKE TRANSCRIPTION FACTOR PUTATIVE |
AT5G50860 | PredictedPhenotypic Enhancement | FSW = 0.0224
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G24820 | PredictedAffinity Capture-MS | FSW = 0.0074
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
AT3G17590 | PredictedPhenotypic Enhancement | FSW = 0.0045
| Unknown | BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING |
AT4G20400 | PredictedPhenotypic Enhancement | FSW = 0.0156
| Unknown | TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN |
AT1G47640 | PredictedPhenotypic Enhancement | FSW = 0.0650
| Unknown | UNKNOWN PROTEIN |
AT3G28730 | PredictedPhenotypic Enhancement | FSW = 0.0044
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT4G21710 | PredictedPhenotypic Enhancement | FSW = 0.0102
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G20850 | PredictedPhenotypic Enhancement | FSW = 0.0074
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G17720 | PredictedPhenotypic Enhancement | FSW = 0.0078
| Unknown | ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G29870 | PredictedPhenotypic Enhancement | FSW = 0.0557
| Unknown | TRNA SYNTHETASE CLASS II (G H P AND S) FAMILY PROTEIN |
AT1G32340 | PredictedPhenotypic Enhancement | FSW = 0.0488
| Unknown | NHL8 PROTEIN BINDING / ZINC ION BINDING |
AT2G27285 | PredictedPhenotypic Enhancement | FSW = 0.0976
| Unknown | UNKNOWN PROTEIN |
AT2G27600 | PredictedPhenotypic Enhancement | FSW = 0.0087
| Unknown | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G27060 | PredictedPhenotypic Enhancement | FSW = 0.0130
| Unknown | TSO2 (TSO MEANING UGLY IN CHINESE) OXIDOREDUCTASE/ RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE/ TRANSITION METAL ION BINDING |
AT3G43250 | PredictedPhenotypic Enhancement | FSW = 0.0279
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT3G59600 | PredictedPhenotypic Enhancement | FSW = 0.0245
| Unknown | NRPB8B DNA-DIRECTED RNA POLYMERASE |
AT4G02220 | PredictedPhenotypic Enhancement | FSW = 0.0245
| Unknown | ZINC FINGER (MYND TYPE) FAMILY PROTEIN / PROGRAMMED CELL DEATH 2 C-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT4G14147 | PredictedPhenotypic Enhancement | FSW = 0.0260
| Unknown | ARPC4 PROTEIN BINDING |
AT5G08415 | PredictedPhenotypic Enhancement | FSW = 0.0244
| Unknown | LIPOIC ACID SYNTHASE FAMILY PROTEIN |
AT5G14050 | PredictedPhenotypic Enhancement | FSW = 0.0066
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G17270 | PredictedPhenotypic Enhancement | FSW = 0.0262
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT5G18400 | PredictedPhenotypic Enhancement | FSW = 0.0234
| Unknown | UNKNOWN PROTEIN |
AT5G22950 | PredictedPhenotypic Enhancement | FSW = 0.0177
| Unknown | VPS241 |
AT5G39930 | PredictedPhenotypic Enhancement | FSW = 0.0262
| Unknown | CLPS5 (CLP1-SIMILAR PROTEIN 5) |
AT5G48180 | PredictedPhenotypic Enhancement | FSW = 0.0256
| Unknown | NSP5 (NITRILE SPECIFIER PROTEIN 5) |
AT5G57280 | PredictedPhenotypic Enhancement | FSW = 0.0220
| Unknown | METHYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454