Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G48760 - ( zinc finger (DHHC type) family protein )

10 Proteins interacs with AT3G48760
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G63110

Predicted

two hybrid

FSW = 0.0234

Class C:

plasma membrane

CELL DIVISION CYCLE PROTEIN-RELATED
AT2G38290

Predicted

Phenotypic Suppression

FSW = 0.0585

Class C:

plasma membrane

ATAMT2 (AMMONIUM TRANSPORTER 2) AMMONIUM TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY SECONDARY ACTIVE AMMONIUM TRANSMEMBRANE TRANSPORTER
AT5G44290

Predicted

two hybrid

FSW = 0.0618

Class C:

plasma membrane

PROTEIN KINASE FAMILY PROTEIN
AT1G74710

Predicted

synthetic growth defect

FSW = 0.0537

Unknown

ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT4G25340

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0401

Unknown

IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT1G25155Predicted

synthetic growth defect

FSW = 0.0502

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G27080

Predicted

two hybrid

FSW = 0.0994

Unknown

NRT16 (NITRATE TRANSPORTER 16) LOW AFFINITY NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER
AT5G14060

Predicted

Synthetic Lethality

FSW = 0.0568

Unknown

CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE
AT5G59890

Predicted

two hybrid

FSW = 0.0205

Unknown

ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING
AT5G60340Predicted

two hybrid

FSW = 0.0286

Unknown

MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454