Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G48780 - ( SPT1 (SERINE PALMITOYLTRANSFERASE 1) serine C-palmitoyltransferase )
36 Proteins interacs with AT3G48780Locus | Method | FSW ![]() | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G32470![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0795
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT1G04820 | PredictedAffinity Capture-MS | FSW = 0.0309
| Unknown | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G12580![]() ![]() ![]() ![]() | Predictedtwo hybridtwo hybrid | FSW = 0.0030
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT2G20450![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0559
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT1G22780![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0767
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.0887
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G23670![]() ![]() ![]() ![]() | PredictedGene fusion methodPhylogenetic profile method | FSW = 0.4025
| Unknown | LCB2 PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE |
AT1G16390![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0586
| Unknown | ATOCT3 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 3) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G20020![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0619
| Unknown | RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT2G09990![]() ![]() ![]() ![]() | Predictedtwo hybridtwo hybrid | FSW = 0.0113
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16A) |
AT3G22890![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0268
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT1G35160![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0084
| Unknown | GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G02500![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0095
| Unknown | SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE |
AT3G13445![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0247
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT5G47630![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0040
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT1G27980![]() ![]() ![]() ![]() | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0743
| Unknown | DPL1 CARBOXY-LYASE/ CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING |
AT4G36480![]() ![]() ![]() ![]() | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSReconstituted Complex | FSW = 0.1035
| Unknown | ATLCB1 (LONG-CHAIN BASE1) PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE |
AT1G13980![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0710
| Unknown | GN (GNOM) GTPGDP ANTIPORTER/ PROTEIN HOMODIMERIZATION |
AT5G56710![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0301
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
AT1G14360![]() ![]() ![]() ![]() | Predictedtwo hybridtwo hybrid | FSW = 0.0456
| Unknown | UTR3 (UDP-GALACTOSE TRANSPORTER 3) PYRIMIDINE NUCLEOTIDE SUGAR TRANSMEMBRANE TRANSPORTER |
AT2G47110 | Predictedtwo hybridtwo hybrid | FSW = 0.0132
| Unknown | UBQ6 PROTEIN BINDING |
AT5G56360![]() ![]() ![]() ![]() | Predictedtwo hybridtwo hybrid | FSW = 0.0529
| Unknown | CALMODULIN-BINDING PROTEIN |
AT2G46860![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0626
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G18660![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0255
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G57140![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0093
| Unknown | PATATIN-RELATED |
AT5G41190![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0663
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT2G16950![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0338
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT3G03110![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0413
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
AT3G24090![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0240
| Unknown | GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE |
AT4G27640![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0305
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
AT3G62120![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0850
| Unknown | TRNA SYNTHETASE CLASS II (G H P AND S) FAMILY PROTEIN |
AT3G58490![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.1155
| Unknown | PHOSPHATIDIC ACID PHOSPHATASE FAMILY PROTEIN / PAP2 FAMILY PROTEIN |
AT1G24470![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0079
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G34770![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.0262
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT4G26230![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0623
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT4G25950![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0331
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454