Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G49100 - ( signal recognition particle 9 kDa protein putative / SRP9 putative )

4 Proteins interacs with AT3G49100
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G57870

Predicted

two hybrid

FSW = 0.0788

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 4F PUTATIVE / EIF-4F PUTATIVE
AT2G38670

Predicted

two hybrid

two hybrid

FSW = 0.0426

Unknown

PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1) ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE
AT2G43640

Predicted

in vitro

in vitro

Enriched domain pair

Co-expression

FSW = 0.0745

Unknown

SIGNAL RECOGNITION PARTICLE 14 KDA FAMILY PROTEIN / SRP14 FAMILY PROTEIN
AT3G60240

Predicted

two hybrid

FSW = 0.0214

Unknown

EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454