Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G49320 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 13 plant structures EXPRESSED DURING 6 growth stages CONTAINS InterPro DOMAIN/s Metal-dependent protein hydrolase (InterProIPR003226) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT5G419701) Has 458 Blast hits to 456 proteins in 209 species Archae - 0 Bacteria - 122 Metazoa - 129 Fungi - 87 Plants - 29 Viruses - 0 Other Eukaryotes - 91 (source NCBI BLink) )

4 Proteins interacs with AT3G49320
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G02130

Predicted

two hybrid

FSW = 0.0093

Unknown

 ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING
AT2G25880

Predicted

Affinity Capture-MS

FSW = 0.0315

Unknown

 ATAUR2 (ATAURORA2) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE
AT5G41970

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0863

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN MITOCHONDRION EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S METAL-DEPENDENT PROTEIN HYDROLASE (INTERPROIPR003226) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G493201) HAS 464 BLAST HITS TO 461 PROTEINS IN 209 SPECIES ARCHAE - 0 BACTERIA - 122 METAZOA - 131 FUNGI - 87 PLANTS - 29 VIRUSES - 0 OTHER EUKARYOTES - 95 (SOURCE NCBI BLINK)
AT2G44740

Predicted

two hybrid

FSW = 0.0556

Unknown

 CYCP41 (CYCLIN P41) CYCLIN-DEPENDENT PROTEIN KINASE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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