Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G49370 - ( calcium-dependent protein kinase putative / CDPK putative )

17 Proteins interacs with AT3G49370
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G14350

Predicted

Phenotypic Enhancement

FSW = 0.1331

Class C:

plasma membrane

PROTEIN KINASE FAMILY PROTEIN
AT4G04340

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.1967

Class C:

plasma membrane

EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT2G38290

Predicted

Phenotypic Enhancement

FSW = 0.0471

Class C:

plasma membrane

ATAMT2 (AMMONIUM TRANSPORTER 2) AMMONIUM TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY SECONDARY ACTIVE AMMONIUM TRANSMEMBRANE TRANSPORTER
AT1G04750

Predicted

Phenotypic Enhancement

FSW = 0.0485

Class C:

plasma membrane

VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT5G24430

Predicted

Gene fusion method

Co-expression

FSW = 0.2000

Class C:

plasma membrane

CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE
AT1G20260

Predicted

Phenotypic Suppression

FSW = 0.0834

Unknown

HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0132

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G54770

Predicted

Phenotypic Enhancement

FSW = 0.1931

Unknown

THI1 PROTEIN HOMODIMERIZATION
AT5G59950

Predicted

Affinity Capture-MS

FSW = 0.0317

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT3G14270

Predicted

Phenotypic Enhancement

FSW = 0.2661

Unknown

PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN
AT5G66590

Predicted

Affinity Capture-MS

FSW = 0.0408

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT1G47830

Predicted

Phenotypic Enhancement

FSW = 0.0807

Unknown

CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE
AT1G78770

Predicted

Phenotypic Enhancement

FSW = 0.0424

Unknown

CELL DIVISION CYCLE FAMILY PROTEIN
AT1G80500

Predicted

Phenotypic Enhancement

FSW = 0.0923

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK)
AT3G11230

Predicted

Phenotypic Suppression

FSW = 0.0331

Unknown

YIPPEE FAMILY PROTEIN
AT5G16980

Predicted

Phenotypic Enhancement

FSW = 0.0938

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT2G46700

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0395

Unknown

CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454