Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G49660 - ( transducin family protein / WD-40 repeat family protein )

69 Proteins interacs with AT3G49660
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G35720

Predicted

Gene fusion method

FSW = 0.0296

Unknown

ANNAT1 (ANNEXIN ARABIDOPSIS 1) ATP BINDING / CALCIUM ION BINDING / CALCIUM-DEPENDENT PHOSPHOLIPID BINDING / COPPER ION BINDING / PEROXIDASE/ PROTEIN HOMODIMERIZATION
AT3G18140

Predicted

Phylogenetic profile method

FSW = 0.0117

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G22110

Predicted

Synthetic Lethality

FSW = 0.0411

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G52140Predicted

Affinity Capture-MS

FSW = 0.0290

Unknown

TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT1G18080

Predicted

Phylogenetic profile method

FSW = 0.0586

Unknown

ATARCA NUCLEOTIDE BINDING
AT5G59690Predicted

Reconstituted Complex

FSW = 0.0594

Unknown

HISTONE H4
AT5G63110

Predicted

Affinity Capture-Western

Affinity Capture-Western

FSW = 0.1750

Unknown

HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT5G65020

Predicted

Gene fusion method

FSW = 0.0448

Unknown

ANNAT2 (ANNEXIN ARABIDOPSIS 2) CALCIUM ION BINDING / CALCIUM-DEPENDENT PHOSPHOLIPID BINDING
AT5G23630

Predicted

Synthetic Lethality

FSW = 0.0240

Unknown

ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT3G05420

Predicted

Co-purification

FSW = 0.0139

Unknown

ACBP4 (ACYL-COA BINDING PROTEIN 4) ACYL-COA BINDING
AT5G52640

Predicted

Affinity Capture-MS

FSW = 0.0221

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT2G20580

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0281

Unknown

RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT1G04710

Predicted

interaction prediction

two hybrid

FSW = 0.0665

Unknown

PKT4 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 4) ACETYL-COA C-ACYLTRANSFERASE/ CATALYTIC
AT1G29260

Predicted

Gene fusion method

Co-expression

FSW = 0.0430

Unknown

PEX7 PEROXISOME MATRIX TARGETING SIGNAL-2 BINDING / PROTEIN BINDING
AT4G16830

Predicted

Affinity Capture-MS

FSW = 0.0237

Unknown

NUCLEAR RNA-BINDING PROTEIN (RGGA)
AT3G10330

Predicted

interaction prediction

FSW = 0.0124

Unknown

TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2)
AT5G19310

Predicted

Phenotypic Suppression

FSW = 0.0575

Unknown

HOMEOTIC GENE REGULATOR PUTATIVE
AT3G12810

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1279

Unknown

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT5G09860

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0566

Unknown

NUCLEAR MATRIX PROTEIN-RELATED
AT3G02990

Predicted

two hybrid

FSW = 0.0278

Unknown

ATHSFA1E DNA BINDING / TRANSCRIPTION FACTOR
AT3G18130

Predicted

Phylogenetic profile method

FSW = 0.0568

Unknown

RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING
AT2G41630

Predicted

two hybrid

FSW = 0.0171

Unknown

TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING
AT2G38560

Predicted

Synthetic Lethality

FSW = 0.1764

Unknown

TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT1G46264

Predicted

interaction prediction

FSW = 0.0370

Unknown

AT-HSFB4 DNA BINDING / TRANSCRIPTION FACTOR
AT5G39840

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0285

Unknown

ATP-DEPENDENT RNA HELICASE MITOCHONDRIAL PUTATIVE
AT3G60510

Predicted

Gene fusion method

FSW = 0.0214

Unknown

ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN
AT2G31970

Predicted

synthetic growth defect

Synthetic Lethality

interaction prediction

FSW = 0.0594

Unknown

RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT4G26840

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0228

Unknown

SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT5G03340

Predicted

Affinity Capture-MS

FSW = 0.0177

Unknown

CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE
AT5G54260

Predicted

synthetic growth defect

FSW = 0.0923

Unknown

MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G18520

Predicted

Reconstituted Complex

FSW = 0.1253

Unknown

HDA15 HISTONE DEACETYLASE
AT3G18860

Predicted

Affinity Capture-MS

FSW = 0.1082

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G22590

Predicted

two hybrid

synthetic growth defect

FSW = 0.2000

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT1G48970

Predicted

Affinity Capture-MS

FSW = 0.0308

Unknown

GTP BINDING / TRANSLATION INITIATION FACTOR
AT1G59890

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2023

Unknown

SNL5 (SIN3-LIKE 5)
AT2G43790

Predicted

Synthetic Rescue

Phenotypic Suppression

FSW = 0.0386

Unknown

ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE
AT3G01090

Predicted

Synthetic Rescue

Phenotypic Suppression

FSW = 0.0814

Unknown

AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT5G10400Predicted

Synthetic Rescue

Reconstituted Complex

FSW = 0.1215

Unknown

HISTONE H3
AT5G63610

Predicted

Affinity Capture-Western

two hybrid

FSW = 0.0732

Unknown

CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G48640

Predicted

Affinity Capture-Western

FSW = 0.0866

Unknown

CYCLIN FAMILY PROTEIN
AT3G21060

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

interaction prediction

FSW = 0.2735

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G14530

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0480

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G03210

Predicted

Affinity Capture-MS

FSW = 0.0352

Unknown

PHENAZINE BIOSYNTHESIS PHZC/PHZF FAMILY PROTEIN
AT3G10950

Predicted

Affinity Capture-MS

FSW = 0.0278

Unknown

60S RIBOSOMAL PROTEIN L37A (RPL37AB)
AT1G10930

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0502

Unknown

RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G30580

Predicted

Affinity Capture-MS

FSW = 0.0117

Unknown

GTP BINDING
AT5G14520

Predicted

Affinity Capture-MS

FSW = 0.0022

Unknown

PESCADILLO-RELATED
AT5G13780

Predicted

synthetic growth defect

FSW = 0.0907

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT4G38630

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.0797

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT1G80410

Predicted

synthetic growth defect

FSW = 0.0823

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT5G61150

Predicted

synthetic growth defect

FSW = 0.1560

Unknown

VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT2G44150

Predicted

Synthetic Lethality

synthetic growth defect

Synthetic Lethality

interaction prediction

FSW = 0.1030

Unknown

ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT1G61040

Predicted

synthetic growth defect

FSW = 0.1709

Unknown

VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT5G08565

Predicted

Synthetic Lethality

FSW = 0.0644

Unknown

POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT5G13680

Predicted

Synthetic Lethality

FSW = 0.0735

Unknown

ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR
AT1G49540

Predicted

Synthetic Lethality

FSW = 0.0602

Unknown

NUCLEOTIDE BINDING
AT5G50320

Predicted

Synthetic Lethality

FSW = 0.0720

Unknown

ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT1G64750

Predicted

Synthetic Lethality

FSW = 0.0794

Unknown

ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))
AT1G51710

Predicted

Synthetic Lethality

FSW = 0.1984

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G52740

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1548

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT2G18000

Predicted

Synthetic Lethality

FSW = 0.1131

Unknown

TAF14 (TBP-ASSOCIATED FACTOR 14)
AT1G54390

Predicted

Synthetic Lethality

FSW = 0.0937

Unknown

PHD FINGER PROTEIN-RELATED
AT5G01720

Predicted

interaction prediction

FSW = 0.0234

Unknown

F-BOX FAMILY PROTEIN (FBL3)
AT2G43770

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0145

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G02730

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1313

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G64730

Predicted

Phylogenetic profile method

FSW = 0.0493

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G48630

Predicted

Phylogenetic profile method

FSW = 0.0635

Unknown

RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B) NUCLEOTIDE BINDING
AT2G22040

Predicted

Phylogenetic profile method

FSW = 0.0087

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G11410

Predicted

Gene fusion method

FSW = 0.0123

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454