Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT3G49660 - ( transducin family protein / WD-40 repeat family protein )
69 Proteins interacs with AT3G49660Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G35720 | PredictedGene fusion method | FSW = 0.0296
| Unknown | ANNAT1 (ANNEXIN ARABIDOPSIS 1) ATP BINDING / CALCIUM ION BINDING / CALCIUM-DEPENDENT PHOSPHOLIPID BINDING / COPPER ION BINDING / PEROXIDASE/ PROTEIN HOMODIMERIZATION |
AT3G18140 | PredictedPhylogenetic profile method | FSW = 0.0117
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G22110 | PredictedSynthetic Lethality | FSW = 0.0411
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G52140 | PredictedAffinity Capture-MS | FSW = 0.0290
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT1G18080 | PredictedPhylogenetic profile method | FSW = 0.0586
| Unknown | ATARCA NUCLEOTIDE BINDING |
AT5G59690 | PredictedReconstituted Complex | FSW = 0.0594
| Unknown | HISTONE H4 |
AT5G63110 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.1750
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT5G65020 | PredictedGene fusion method | FSW = 0.0448
| Unknown | ANNAT2 (ANNEXIN ARABIDOPSIS 2) CALCIUM ION BINDING / CALCIUM-DEPENDENT PHOSPHOLIPID BINDING |
AT5G23630 | PredictedSynthetic Lethality | FSW = 0.0240
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT3G05420 | PredictedCo-purification | FSW = 0.0139
| Unknown | ACBP4 (ACYL-COA BINDING PROTEIN 4) ACYL-COA BINDING |
AT5G52640 | PredictedAffinity Capture-MS | FSW = 0.0221
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G20580 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0281
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT1G04710 | Predictedinteraction predictiontwo hybrid | FSW = 0.0665
| Unknown | PKT4 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 4) ACETYL-COA C-ACYLTRANSFERASE/ CATALYTIC |
AT1G29260 | PredictedGene fusion methodCo-expression | FSW = 0.0430
| Unknown | PEX7 PEROXISOME MATRIX TARGETING SIGNAL-2 BINDING / PROTEIN BINDING |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0237
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT3G10330 | Predictedinteraction prediction | FSW = 0.0124
| Unknown | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
AT5G19310 | PredictedPhenotypic Suppression | FSW = 0.0575
| Unknown | HOMEOTIC GENE REGULATOR PUTATIVE |
AT3G12810 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1279
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT5G09860 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0566
| Unknown | NUCLEAR MATRIX PROTEIN-RELATED |
AT3G02990 | Predictedtwo hybrid | FSW = 0.0278
| Unknown | ATHSFA1E DNA BINDING / TRANSCRIPTION FACTOR |
AT3G18130 | PredictedPhylogenetic profile method | FSW = 0.0568
| Unknown | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
AT2G41630 | Predictedtwo hybrid | FSW = 0.0171
| Unknown | TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
AT2G38560 | PredictedSynthetic Lethality | FSW = 0.1764
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT1G46264 | Predictedinteraction prediction | FSW = 0.0370
| Unknown | AT-HSFB4 DNA BINDING / TRANSCRIPTION FACTOR |
AT5G39840 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0285
| Unknown | ATP-DEPENDENT RNA HELICASE MITOCHONDRIAL PUTATIVE |
AT3G60510 | PredictedGene fusion method | FSW = 0.0214
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT2G31970 | Predictedsynthetic growth defectSynthetic Lethalityinteraction prediction | FSW = 0.0594
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT4G26840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0228
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT5G03340 | PredictedAffinity Capture-MS | FSW = 0.0177
| Unknown | CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE |
AT5G54260 | Predictedsynthetic growth defect | FSW = 0.0923
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G18520 | PredictedReconstituted Complex | FSW = 0.1253
| Unknown | HDA15 HISTONE DEACETYLASE |
AT3G18860 | PredictedAffinity Capture-MS | FSW = 0.1082
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G22590 | Predictedtwo hybridsynthetic growth defect | FSW = 0.2000
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT1G48970 | PredictedAffinity Capture-MS | FSW = 0.0308
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT1G59890 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2023
| Unknown | SNL5 (SIN3-LIKE 5) |
AT2G43790 | PredictedSynthetic RescuePhenotypic Suppression | FSW = 0.0386
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
AT3G01090 | PredictedSynthetic RescuePhenotypic Suppression | FSW = 0.0814
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT5G10400 | PredictedSynthetic RescueReconstituted Complex | FSW = 0.1215
| Unknown | HISTONE H3 |
AT5G63610 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0732
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G48640 | PredictedAffinity Capture-Western | FSW = 0.0866
| Unknown | CYCLIN FAMILY PROTEIN |
AT3G21060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridinteraction prediction | FSW = 0.2735
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G14530 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0480
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G03210 | PredictedAffinity Capture-MS | FSW = 0.0352
| Unknown | PHENAZINE BIOSYNTHESIS PHZC/PHZF FAMILY PROTEIN |
AT3G10950 | PredictedAffinity Capture-MS | FSW = 0.0278
| Unknown | 60S RIBOSOMAL PROTEIN L37A (RPL37AB) |
AT1G10930 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0502
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G30580 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | GTP BINDING |
AT5G14520 | PredictedAffinity Capture-MS | FSW = 0.0022
| Unknown | PESCADILLO-RELATED |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.0907
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT4G38630 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.0797
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0823
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT5G61150 | Predictedsynthetic growth defect | FSW = 0.1560
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT2G44150 | PredictedSynthetic Lethalitysynthetic growth defectSynthetic Lethalityinteraction prediction | FSW = 0.1030
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT1G61040 | Predictedsynthetic growth defect | FSW = 0.1709
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT5G08565 | PredictedSynthetic Lethality | FSW = 0.0644
| Unknown | POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT5G13680 | PredictedSynthetic Lethality | FSW = 0.0735
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
AT1G49540 | PredictedSynthetic Lethality | FSW = 0.0602
| Unknown | NUCLEOTIDE BINDING |
AT5G50320 | PredictedSynthetic Lethality | FSW = 0.0720
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
AT1G64750 | PredictedSynthetic Lethality | FSW = 0.0794
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
AT1G51710 | PredictedSynthetic Lethality | FSW = 0.1984
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G52740 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1548
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT2G18000 | PredictedSynthetic Lethality | FSW = 0.1131
| Unknown | TAF14 (TBP-ASSOCIATED FACTOR 14) |
AT1G54390 | PredictedSynthetic Lethality | FSW = 0.0937
| Unknown | PHD FINGER PROTEIN-RELATED |
AT5G01720 | Predictedinteraction prediction | FSW = 0.0234
| Unknown | F-BOX FAMILY PROTEIN (FBL3) |
AT2G43770 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0145
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G02730 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1313
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G64730 | PredictedPhylogenetic profile method | FSW = 0.0493
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G48630 | PredictedPhylogenetic profile method | FSW = 0.0635
| Unknown | RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B) NUCLEOTIDE BINDING |
AT2G22040 | PredictedPhylogenetic profile method | FSW = 0.0087
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G11410 | PredictedGene fusion method | FSW = 0.0123
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454