Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT3G49830 - ( DNA helicase-related )
48 Proteins interacs with AT3G49830Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G20010 | PredictedAffinity Capture-MS | FSW = 0.1169
| Class C:plastid | TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G49240 | PredictedAffinity Capture-MS | FSW = 0.0665
| Class C:plastid | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G30860 | PredictedAffinity Capture-MS | FSW = 0.0686
| Class C:plastid | ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) COPPER ION BINDING / GLUTATHIONE BINDING / GLUTATHIONE PEROXIDASE/ GLUTATHIONE TRANSFERASE |
AT1G07660 | PredictedAffinity Capture-MS | FSW = 0.0943
| Class C:plastid | HISTONE H4 |
AT1G04820 | PredictedAffinity Capture-MS | FSW = 0.0972
| Class C:plastid | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G72370 | PredictedAffinity Capture-MS | FSW = 0.0370
| Class C:plastid | P40 STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G18080 | PredictedAffinity Capture-MS | FSW = 0.0050
| Class C:plastid | ATARCA NUCLEOTIDE BINDING |
AT5G67630 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4219
| Class C:plastid | DNA HELICASE PUTATIVE |
AT5G22330 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybridPhylogenetic profile methodCo-expression | FSW = 0.2558
| Class C:plastid | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING |
AT1G29900 | PredictedAffinity Capture-MS | FSW = 0.1169
| Class C:plastid | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC |
AT3G10050 | PredictedAffinity Capture-MS | FSW = 0.0976
| Class C:plastid | OMR1 (L-O-METHYLTHREONINE RESISTANT 1) L-THREONINE AMMONIA-LYASE |
AT1G48860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0616
| Class C:plastid | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT1G64790 | PredictedAffinity Capture-MS | FSW = 0.1652
| Unknown | BINDING |
AT2G33730 | PredictedAffinity Capture-MS | FSW = 0.0577
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT4G38495 | PredictedAffinity Capture-MS | FSW = 0.1190
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S YL1 NUCLEAR C-TERMINAL (INTERPROIPR013272) HAS 189 BLAST HITS TO 189 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 80 FUNGI - 83 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 9 (SOURCE NCBI BLINK) |
AT2G16600 | PredictedAffinity Capture-MS | FSW = 0.0085
| Unknown | ROC3 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G52640 | PredictedAffinity Capture-MS | FSW = 0.0111
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G19990 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT2G44680 | PredictedAffinity Capture-MS | FSW = 0.0351
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT4G02070 | PredictedAffinity Capture-MS | FSW = 0.0165
| Unknown | MSH6 (MUTS HOMOLOG 6) DAMAGED DNA BINDING |
AT3G12810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0436
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G05060 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0420
| Unknown | SAR DNA-BINDING PROTEIN PUTATIVE |
AT3G57300 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1111
| Unknown | INO80 (INO80 ORTHOLOG) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G47210 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1069
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT1G55520 | PredictedAffinity Capture-WesternReconstituted ComplexSynthetic Lethality | FSW = 0.0672
| Unknown | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT3G09810 | PredictedAffinity Capture-MS | FSW = 0.1214
| Unknown | ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT5G26710 | PredictedAffinity Capture-MS | FSW = 0.0660
| Unknown | GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE |
AT1G10130 | PredictedAffinity Capture-MS | FSW = 0.0074
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT1G79750 | PredictedAffinity Capture-MS | FSW = 0.1994
| Unknown | ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
AT1G53300 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1342
| Unknown | TTL1 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 1) BINDING |
AT2G45790 | PredictedAffinity Capture-MS | FSW = 0.1094
| Unknown | PMM (PHOSPHOMANNOMUTASE) PHOSPHOMANNOMUTASE |
AT3G12380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1591
| Unknown | ATARP5 (ACTIN-RELATED PROTEIN 5) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G52740 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0690
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT2G17380 | PredictedAffinity Capture-MS | FSW = 0.0483
| Unknown | AP19 PROTEIN BINDING / PROTEIN TRANSPORTER |
AT1G17470 | PredictedAffinity Capture-MS | FSW = 0.0241
| Unknown | ATDRG1 (ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1) GTP BINDING / GTPASE |
AT2G18000 | PredictedAffinity Capture-MS | FSW = 0.0530
| Unknown | TAF14 (TBP-ASSOCIATED FACTOR 14) |
AT4G27640 | PredictedAffinity Capture-MS | FSW = 0.0554
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
AT1G55810 | PredictedAffinity Capture-MS | FSW = 0.0354
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT1G64550 | PredictedAffinity Capture-MS | FSW = 0.0660
| Unknown | ATGCN3 TRANSPORTER |
AT3G24090 | PredictedAffinity Capture-MS | FSW = 0.1120
| Unknown | GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE |
AT4G10320 | PredictedAffinity Capture-MS | FSW = 0.0525
| Unknown | ISOLEUCYL-TRNA SYNTHETASE PUTATIVE / ISOLEUCINE--TRNA LIGASE PUTATIVE |
AT2G39770 | PredictedAffinity Capture-MS | FSW = 0.1327
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT1G36240 | PredictedAffinity Capture-MS | FSW = 0.0431
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30A) |
AT1G02080 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0476
| Unknown | TRANSCRIPTIONAL REGULATOR-RELATED |
AT1G29940 | PredictedAffinity Capture-MS | FSW = 0.0822
| Unknown | NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
AT1G02690 | PredictedAffinity Capture-MS | FSW = 0.0282
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT2G27170 | PredictedAffinity Capture-MS | FSW = 0.0476
| Unknown | TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING |
AT1G20925 | PredictedAffinity Capture-MS | FSW = 0.0523
| Unknown | AUXIN EFFLUX CARRIER FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454