Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G49920 - ( VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5) voltage-gated anion channel )
35 Proteins interacs with AT3G49920Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G09590 | PredictedPhenotypic Suppression | FSW = 0.1072
| Class C:mitochondrion | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT5G57490 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0301
| Class C:mitochondrion | VDAC4 (VOLTAGE DEPENDENT ANION CHANNEL 4) VOLTAGE-GATED ANION CHANNEL |
AT2G41380 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0364
| Class C:mitochondrion | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT2G30160 | PredictedPhenotypic Enhancement | FSW = 0.1731
| Class C:mitochondrion | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT3G09630 | PredictedPhenotypic Enhancement | FSW = 0.0418
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT4G21980 | PredictedPhenotypic Suppression | FSW = 0.0428
| Unknown | APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE |
AT5G16150 | PredictedPhenotypic Enhancement | FSW = 0.0333
| Unknown | PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G12900 | PredictedPhenotypic Enhancement | FSW = 0.0201
| Unknown | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT5G60540 | PredictedPhenotypic Suppression | FSW = 0.2124
| Unknown | PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION |
AT2G32670 | PredictedPhenotypic Enhancement | FSW = 0.1877
| Unknown | ATVAMP725 |
AT4G33090 | PredictedPhenotypic Suppression | FSW = 0.1225
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT1G21700 | PredictedPhenotypic Suppression | FSW = 0.0247
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT1G28460 | PredictedPhenotypic Suppression | FSW = 0.0986
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G25340 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1799
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT3G18480 | PredictedPhenotypic Suppression | FSW = 0.1023
| Unknown | ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT) |
AT5G02730 | PredictedPhenotypic Enhancement | FSW = 0.0612
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT2G19980 | PredictedPhenotypic Suppression | FSW = 0.1397
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G16420 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0986
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT2G15910 | PredictedPhenotypic Enhancement | FSW = 0.1337
| Unknown | CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN |
AT2G39590 | PredictedAffinity Capture-MS | FSW = 0.0225
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AC) |
AT3G06483 | PredictedPhenotypic Suppression | FSW = 0.0928
| Unknown | PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE |
AT1G20693 | PredictedPhenotypic Enhancement | FSW = 0.1691
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G27040 | PredictedPhenotypic Suppression | FSW = 0.1254
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G29970 | PredictedPhenotypic Suppression | FSW = 0.1450
| Unknown | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) |
AT1G55300 | PredictedPhenotypic Enhancement | FSW = 0.1855
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G80710 | PredictedPhenotypic Enhancement | FSW = 0.0470
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G03130 | PredictedPhenotypic Enhancement | FSW = 0.1890
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT3G14090 | PredictedSynthetic Lethality | FSW = 0.0156
| Unknown | ATEXO70D3 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN D3) PROTEIN BINDING |
AT3G25900 | PredictedPhenotypic Suppression | FSW = 0.1048
| Unknown | HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE |
AT3G59540 | PredictedSynthetic Lethality | FSW = 0.1246
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G10360 | PredictedPhenotypic Enhancement | FSW = 0.1013
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 453 BLAST HITS TO 451 PROTEINS IN 101 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 225 FUNGI - 97 PLANTS - 91 VIRUSES - 3 OTHER EUKARYOTES - 37 (SOURCE NCBI BLINK) |
AT4G16360 | PredictedPhenotypic Enhancement | FSW = 0.0469
| Unknown | AMP-ACTIVATED PROTEIN KINASE |
AT5G14060 | PredictedSynthetic Lethality | FSW = 0.2286
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT4G00800 | PredictedPhenotypic Suppression | FSW = 0.2402
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G41700 | PredictedPhenotypic Enhancement | FSW = 0.0701
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454