Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G50360 - ( ATCEN2 (CENTRIN2) calcium ion binding )
55 Proteins interacs with AT3G50360Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G05380 | Experimental | FSW = 0.0555
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT3G06290 | Experimentaltwo hybridprotein complementation assay | FSW = 0.1366
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SAC3/GANP/NIN1/MTS3/EIF-3 P25 (INTERPROIPR005062) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SAC3/GANP FAMILY PROTEIN (TAIRAT3G543801) HAS 1341 BLAST HITS TO 841 PROTEINS IN 168 SPECIES ARCHAE - 0 BACTERIA - 24 METAZOA - 448 FUNGI - 228 PLANTS - 85 VIRUSES - 0 OTHER EUKARYOTES - 556 (SOURCE NCBI BLINK) |
AT2G39340 | Experimentaltwo hybridprotein complementation assay | FSW = 0.0561
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT2G27030 | PredictedPhylogenetic profile method | FSW = 0.5974
| Class C:plasma membrane | CAM5 (CALMODULIN 5) CALCIUM ION BINDING |
AT5G38480 | PredictedAffinity Capture-MS | FSW = 0.0100
| Class C:plasma membrane | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G12310 | PredictedPhylogenetic profile method | FSW = 0.6118
| Class C:plasma membrane | CALMODULIN PUTATIVE |
AT1G76650 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7416
| Class C:plasma membrane | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT5G37770 | PredictedPhylogenetic profile method | FSW = 0.7416
| Class C:plasma membrane | TCH2 (TOUCH 2) CALCIUM ION BINDING |
AT3G43810 | Predictedinterologs mappingGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2227
| Class C:plasma membrane | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT1G66410 | Predictedinterologs mappingPhylogenetic profile methodCo-expression | FSW = 0.2263
| Class C:plasma membrane | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT1G18210 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1805
| Class C:plasma membrane | CALCIUM-BINDING PROTEIN PUTATIVE |
AT5G12480 | Predictedbiochemical | FSW = 0.0106
| Class C:plasma membrane | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G17140 | PredictedAffinity Capture-MS | FSW = 0.0533
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PLECKSTRIN HOMOLOGY (INTERPROIPR001849) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PHOSPHOINOSITIDE BINDING (TAIRAT1G480902) HAS 1924 BLAST HITS TO 1182 PROTEINS IN 161 SPECIES ARCHAE - 0 BACTERIA - 16 METAZOA - 911 FUNGI - 304 PLANTS - 271 VIRUSES - 0 OTHER EUKARYOTES - 422 (SOURCE NCBI BLINK) |
AT1G48090 | PredictedAffinity Capture-MS | FSW = 0.0781
| Unknown | PHOSPHOINOSITIDE BINDING |
AT1G03475 | PredictedAffinity Capture-MS | FSW = 0.0321
| Unknown | LIN2 (LESION INITIATION 2) COPROPORPHYRINOGEN OXIDASE |
AT3G10050 | PredictedAffinity Capture-MS | FSW = 0.0149
| Unknown | OMR1 (L-O-METHYLTHREONINE RESISTANT 1) L-THREONINE AMMONIA-LYASE |
AT2G30390 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0066
| Unknown | FC2 (FERROCHELATASE 2) FERROCHELATASE |
AT3G10730 | Predictedsynthetic growth defectinterologs mapping | FSW = 0.0184
| Unknown | SAD1/UNC-84-LIKE 2 FAMILY PROTEIN |
AT4G37010 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7403
| Unknown | CALTRACTIN PUTATIVE / CENTRIN PUTATIVE |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0036
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT1G24620 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2572
| Unknown | POLCALCIN PUTATIVE / CALCIUM-BINDING POLLEN ALLERGEN PUTATIVE |
AT4G03290 | PredictedPhylogenetic profile method | FSW = 0.7305
| Unknown | CALCIUM-BINDING PROTEIN PUTATIVE |
AT1G62820 | PredictedPhylogenetic profile method | FSW = 0.7093
| Unknown | CALMODULIN PUTATIVE |
AT5G37780 | PredictedPhylogenetic profile method | FSW = 0.7198
| Unknown | CAM1 (CALMODULIN 1) CALCIUM ION BINDING |
AT4G16420 | PredictedAffinity Capture-MS | FSW = 0.0072
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G49480 | PredictedPhylogenetic profile method | FSW = 0.7692
| Unknown | ATCP1 (CA2+-BINDING PROTEIN 1) CALCIUM ION BINDING |
AT3G03000 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.7198
| Unknown | CALMODULIN PUTATIVE |
AT1G77720 | Predictedsynthetic growth defect | FSW = 0.0073
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G04950 | PredictedAffinity Capture-MS | FSW = 0.0323
| Unknown | TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT2G39770 | PredictedAffinity Capture-MS | FSW = 0.0171
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT3G54380 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSinterologs mappingReconstituted Complex | FSW = 0.0109
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT3G07740 | PredictedAffinity Capture-MS | FSW = 0.0149
| Unknown | ADA2A (HOMOLOG OF YEAST ADA2 2A) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G64750 | PredictedAffinity Capture-MS | FSW = 0.0109
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
AT3G25600 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.7416
| Unknown | CALCIUM ION BINDING |
AT3G03410 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7416
| Unknown | CALMODULIN-RELATED PROTEIN PUTATIVE |
AT3G56800 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.7305
| Unknown | CAM3 (CALMODULIN 3) CALCIUM ION BINDING |
AT1G76640 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7273
| Unknown | CALMODULIN-RELATED PROTEIN PUTATIVE |
AT3G22930 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.7416
| Unknown | CALMODULIN PUTATIVE |
AT3G51920 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2829
| Unknown | CAM9 (CALMODULIN 9) CALCIUM ION BINDING |
AT5G44460 | PredictedPhylogenetic profile method | FSW = 0.2500
| Unknown | CALCIUM-BINDING PROTEIN PUTATIVE |
AT1G18530 | PredictedPhylogenetic profile method | FSW = 0.7198
| Unknown | CALMODULIN PUTATIVE |
AT1G66400 | PredictedPhylogenetic profile method | FSW = 0.7198
| Unknown | CALMODULIN-RELATED PROTEIN PUTATIVE |
AT1G73630 | PredictedPhylogenetic profile method | FSW = 0.7556
| Unknown | CALCIUM-BINDING PROTEIN PUTATIVE |
AT3G03400 | PredictedPhylogenetic profile method | FSW = 0.7416
| Unknown | CALMODULIN-RELATED PROTEIN PUTATIVE |
AT5G17470 | PredictedPhylogenetic profile method | FSW = 0.7198
| Unknown | CALMODULIN-RELATED PROTEIN PUTATIVE |
AT5G21274 | PredictedPhylogenetic profile method | FSW = 0.2646
| Unknown | CAM6 (CALMODULIN 6) CALCIUM ION BINDING |
AT1G05990 | PredictedPhylogenetic profile method | FSW = 0.7416
| Unknown | CALCIUM-BINDING PROTEIN PUTATIVE |
AT4G12860 | PredictedPhylogenetic profile method | FSW = 0.7416
| Unknown | UNE14 (UNFERTILIZED EMBRYO SAC 14) CALCIUM ION BINDING |
AT1G21550 | PredictedPhylogenetic profile method | FSW = 0.7584
| Unknown | CALCIUM-BINDING PROTEIN PUTATIVE |
AT3G07490 | PredictedPhylogenetic profile method | FSW = 0.7416
| Unknown | AGD11 (ARF-GAP DOMAIN 11) CALCIUM ION BINDING |
AT4G20780 | PredictedPhylogenetic profile method | FSW = 0.1548
| Unknown | CALCIUM-BINDING PROTEIN PUTATIVE |
AT4G14640 | PredictedPhylogenetic profile method | FSW = 0.3285
| Unknown | CAM8 (CALMODULIN 8) CALCIUM ION BINDING |
AT2G36180 | PredictedPhylogenetic profile method | FSW = 0.7305
| Unknown | CALMODULIN-RELATED PROTEIN PUTATIVE |
AT1G32250 | PredictedPhylogenetic profile method | FSW = 0.7556
| Unknown | CALMODULIN PUTATIVE |
AT2G41110 | PredictedPhylogenetic profile method | FSW = 0.7198
| Unknown | CAM2 (CALMODULIN 2) CALCIUM ION BINDING / PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454