Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G50780 - ( INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages BEST Arabidopsis thaliana protein match is PRLI-interacting factor-related (TAIRAT1G638501) Has 173 Blast hits to 173 proteins in 14 species Archae - 0 Bacteria - 0 Metazoa - 8 Fungi - 0 Plants - 164 Viruses - 0 Other Eukaryotes - 1 (source NCBI BLink) )

62 Proteins interacs with AT3G50780
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G09630

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-MS

two hybrid

Affinity Capture-MS

Reconstituted Complex

interologs mapping

FSW = 0.1356

Unknown

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT5G09590

Predicted

Phenotypic Enhancement

FSW = 0.1059

Unknown

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT1G16240

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0738

Unknown

SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR
AT3G22110

Predicted

Phenotypic Enhancement

FSW = 0.0449

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G48170

Predicted

Affinity Capture-MS

FSW = 0.1642

Unknown

ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT1G11870

Predicted

Phenotypic Enhancement

FSW = 0.1090

Unknown

SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE
AT5G25400

Predicted

Phenotypic Enhancement

FSW = 0.0849

Unknown

PHOSPHATE TRANSLOCATOR-RELATED
AT2G43030

Predicted

Affinity Capture-MS

FSW = 0.1211

Unknown

RIBOSOMAL PROTEIN L3 FAMILY PROTEIN
AT3G54670

Predicted

Phenotypic Enhancement

FSW = 0.0054

Unknown

TTN8 (TITAN8) ATP BINDING / TRANSPORTER
AT5G03650

Predicted

Affinity Capture-MS

FSW = 0.1458

Unknown

SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME
AT4G36490

Predicted

Affinity Capture-MS

FSW = 0.1616

Unknown

SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER
AT4G04340

Predicted

Affinity Capture-MS

FSW = 0.0475

Unknown

EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT4G34430

Predicted

Affinity Capture-MS

FSW = 0.0233

Unknown

CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT1G79020

Predicted

synthetic growth defect

FSW = 0.0721

Unknown

TRANSCRIPTION FACTOR-RELATED
AT2G38880

Predicted

Affinity Capture-MS

FSW = 0.1506

Unknown

NF-YB1 (NUCLEAR FACTOR Y SUBUNIT B1) TRANSCRIPTION FACTOR
AT3G20970

Predicted

Affinity Capture-MS

FSW = 0.0839

Unknown

NFU4 STRUCTURAL MOLECULE
AT2G30160

Predicted

Phenotypic Enhancement

FSW = 0.1864

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT3G18480

Predicted

Phenotypic Enhancement

FSW = 0.0434

Unknown

ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT)
AT1G64880

Predicted

Phenotypic Suppression

FSW = 0.0668

Unknown

RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT1G17810

Predicted

Phenotypic Enhancement

FSW = 0.0294

Unknown

BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL
AT4G39200

Predicted

Phenotypic Enhancement

FSW = 0.1952

Unknown

40S RIBOSOMAL PROTEIN S25 (RPS25E)
AT4G13090

Predicted

Affinity Capture-MS

FSW = 0.0668

Unknown

XYLOGLUCANXYLOGLUCOSYL TRANSFERASE PUTATIVE / XYLOGLUCAN ENDOTRANSGLYCOSYLASE PUTATIVE / ENDO-XYLOGLUCAN TRANSFERASE PUTATIVE
AT4G27070

Predicted

Affinity Capture-MS

FSW = 0.1455

Unknown

TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE
AT4G16420

Predicted

Phenotypic Enhancement

FSW = 0.0640

Unknown

ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR
AT2G29540

Predicted

Affinity Capture-MS

Phenotypic Enhancement

FSW = 0.1577

Unknown

ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT4G17190

Predicted

Phenotypic Enhancement

FSW = 0.1439

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G52500

Predicted

Phenotypic Enhancement

FSW = 0.1329

Unknown

ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE
AT1G60730

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0703

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT1G68020

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2410

Unknown

ATTPS6 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT2G15910

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2943

Unknown

CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN
AT2G30800

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1892

Unknown

HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM) ATP BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G37420

Predicted

Phenotypic Suppression

FSW = 0.1739

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT2G47760

Predicted

Phenotypic Enhancement

FSW = 0.0384

Unknown

ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC
AT3G12200

Predicted

Affinity Capture-MS

FSW = 0.1605

Unknown

ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G18850

Predicted

Affinity Capture-MS

FSW = 0.1367

Unknown

LPAT5 ACYLTRANSFERASE
AT3G46320Predicted

Affinity Capture-MS

FSW = 0.0489

Unknown

HISTONE H4
AT1G10980

Predicted

Phenotypic Enhancement

FSW = 0.0549

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 8 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G616701) HAS 482 BLAST HITS TO 481 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 255 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK)
AT1G11755

Predicted

Affinity Capture-MS

FSW = 0.1167

Unknown

LEW1 (LEAF WILTING 1) DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE
AT1G19750

Predicted

Phenotypic Suppression

FSW = 0.1779

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G34580

Predicted

Phenotypic Enhancement

FSW = 0.0613

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G55300

Predicted

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Enhancement

FSW = 0.1460

Unknown

TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G72680

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0707

Unknown

CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE
AT1G80500

Predicted

Affinity Capture-MS

FSW = 0.0230

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK)
AT2G01600

Predicted

Phenotypic Enhancement

FSW = 0.0929

Unknown

EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN
AT2G23820

Predicted

Phenotypic Suppression

FSW = 0.0233

Unknown

METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN
AT2G31020

Predicted

Affinity Capture-MS

FSW = 0.0359

Unknown

ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT4G04700

Predicted

Affinity Capture-MS

FSW = 0.1005

Unknown

CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT4G19560

Predicted

Phenotypic Enhancement

FSW = 0.2157

Unknown

CYCT12 CYCLIN-DEPENDENT PROTEIN KINASE
AT4G23420

Predicted

Phenotypic Enhancement

FSW = 0.0632

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT4G27130

Predicted

Phenotypic Enhancement

FSW = 0.0976

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT5G01430

Predicted

Phenotypic Enhancement

FSW = 0.1633

Unknown

GOT1-LIKE FAMILY PROTEIN
AT5G06600

Predicted

Phenotypic Suppression

FSW = 0.0474

Unknown

UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT5G14060

Predicted

Phenotypic Enhancement

FSW = 0.1542

Unknown

CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE
AT5G41700

Predicted

Affinity Capture-MS

Phenotypic Enhancement

FSW = 0.0679

Unknown

UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G42720

Predicted

Phenotypic Enhancement

FSW = 0.1591

Unknown

GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT4G10360

Predicted

Phenotypic Suppression

FSW = 0.0784

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 453 BLAST HITS TO 451 PROTEINS IN 101 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 225 FUNGI - 97 PLANTS - 91 VIRUSES - 3 OTHER EUKARYOTES - 37 (SOURCE NCBI BLINK)
AT4G21480

Predicted

Affinity Capture-MS

FSW = 0.0645

Unknown

CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT4G26230

Predicted

Affinity Capture-MS

FSW = 0.0190

Unknown

60S RIBOSOMAL PROTEIN L31 (RPL31B)
AT5G15070

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0171

Unknown

ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING
AT5G19510

Predicted

Affinity Capture-MS

FSW = 0.0783

Unknown

ELONGATION FACTOR 1B ALPHA-SUBUNIT 2 (EEF1BALPHA2)
AT5G39400

Predicted

Affinity Capture-MS

FSW = 0.0281

Unknown

PTEN1 PHOSPHATASE
AT5G60050

Predicted

Phylogenetic profile method

FSW = 0.0615

Unknown

PRLI-INTERACTING FACTOR-RELATED

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454