Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G50780 - ( INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages BEST Arabidopsis thaliana protein match is PRLI-interacting factor-related (TAIRAT1G638501) Has 173 Blast hits to 173 proteins in 14 species Archae - 0 Bacteria - 0 Metazoa - 8 Fungi - 0 Plants - 164 Viruses - 0 Other Eukaryotes - 1 (source NCBI BLink) )
62 Proteins interacs with AT3G50780Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MStwo hybridAffinity Capture-MSReconstituted Complexinterologs mapping | FSW = 0.1356
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT5G09590 | PredictedPhenotypic Enhancement | FSW = 0.1059
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT1G16240 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0738
| Unknown | SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR |
AT3G22110 | PredictedPhenotypic Enhancement | FSW = 0.0449
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G48170 | PredictedAffinity Capture-MS | FSW = 0.1642
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT1G11870 | PredictedPhenotypic Enhancement | FSW = 0.1090
| Unknown | SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE |
AT5G25400 | PredictedPhenotypic Enhancement | FSW = 0.0849
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT2G43030 | PredictedAffinity Capture-MS | FSW = 0.1211
| Unknown | RIBOSOMAL PROTEIN L3 FAMILY PROTEIN |
AT3G54670 | PredictedPhenotypic Enhancement | FSW = 0.0054
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT5G03650 | PredictedAffinity Capture-MS | FSW = 0.1458
| Unknown | SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME |
AT4G36490 | PredictedAffinity Capture-MS | FSW = 0.1616
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT4G04340 | PredictedAffinity Capture-MS | FSW = 0.0475
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0233
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G79020 | Predictedsynthetic growth defect | FSW = 0.0721
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT2G38880 | PredictedAffinity Capture-MS | FSW = 0.1506
| Unknown | NF-YB1 (NUCLEAR FACTOR Y SUBUNIT B1) TRANSCRIPTION FACTOR |
AT3G20970 | PredictedAffinity Capture-MS | FSW = 0.0839
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT2G30160 | PredictedPhenotypic Enhancement | FSW = 0.1864
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT3G18480 | PredictedPhenotypic Enhancement | FSW = 0.0434
| Unknown | ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT) |
AT1G64880 | PredictedPhenotypic Suppression | FSW = 0.0668
| Unknown | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
AT1G17810 | PredictedPhenotypic Enhancement | FSW = 0.0294
| Unknown | BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL |
AT4G39200 | PredictedPhenotypic Enhancement | FSW = 0.1952
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT4G13090 | PredictedAffinity Capture-MS | FSW = 0.0668
| Unknown | XYLOGLUCANXYLOGLUCOSYL TRANSFERASE PUTATIVE / XYLOGLUCAN ENDOTRANSGLYCOSYLASE PUTATIVE / ENDO-XYLOGLUCAN TRANSFERASE PUTATIVE |
AT4G27070 | PredictedAffinity Capture-MS | FSW = 0.1455
| Unknown | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE |
AT4G16420 | PredictedPhenotypic Enhancement | FSW = 0.0640
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT2G29540 | PredictedAffinity Capture-MSPhenotypic Enhancement | FSW = 0.1577
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT4G17190 | PredictedPhenotypic Enhancement | FSW = 0.1439
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G52500 | PredictedPhenotypic Enhancement | FSW = 0.1329
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT1G60730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0703
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G68020 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2410
| Unknown | ATTPS6 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT2G15910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2943
| Unknown | CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN |
AT2G30800 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1892
| Unknown | HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM) ATP BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G37420 | PredictedPhenotypic Suppression | FSW = 0.1739
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT2G47760 | PredictedPhenotypic Enhancement | FSW = 0.0384
| Unknown | ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC |
AT3G12200 | PredictedAffinity Capture-MS | FSW = 0.1605
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G18850 | PredictedAffinity Capture-MS | FSW = 0.1367
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G46320 | PredictedAffinity Capture-MS | FSW = 0.0489
| Unknown | HISTONE H4 |
AT1G10980 | PredictedPhenotypic Enhancement | FSW = 0.0549
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 8 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G616701) HAS 482 BLAST HITS TO 481 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 255 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK) |
AT1G11755 | PredictedAffinity Capture-MS | FSW = 0.1167
| Unknown | LEW1 (LEAF WILTING 1) DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE |
AT1G19750 | PredictedPhenotypic Suppression | FSW = 0.1779
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G34580 | PredictedPhenotypic Enhancement | FSW = 0.0613
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G55300 | PredictedAffinity Capture-MSAffinity Capture-MSPhenotypic Enhancement | FSW = 0.1460
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G72680 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0707
| Unknown | CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE |
AT1G80500 | PredictedAffinity Capture-MS | FSW = 0.0230
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK) |
AT2G01600 | PredictedPhenotypic Enhancement | FSW = 0.0929
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT2G23820 | PredictedPhenotypic Suppression | FSW = 0.0233
| Unknown | METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0359
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT4G04700 | PredictedAffinity Capture-MS | FSW = 0.1005
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G19560 | PredictedPhenotypic Enhancement | FSW = 0.2157
| Unknown | CYCT12 CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G23420 | PredictedPhenotypic Enhancement | FSW = 0.0632
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT4G27130 | PredictedPhenotypic Enhancement | FSW = 0.0976
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G01430 | PredictedPhenotypic Enhancement | FSW = 0.1633
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G06600 | PredictedPhenotypic Suppression | FSW = 0.0474
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT5G14060 | PredictedPhenotypic Enhancement | FSW = 0.1542
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT5G41700 | PredictedAffinity Capture-MSPhenotypic Enhancement | FSW = 0.0679
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G42720 | PredictedPhenotypic Enhancement | FSW = 0.1591
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT4G10360 | PredictedPhenotypic Suppression | FSW = 0.0784
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 453 BLAST HITS TO 451 PROTEINS IN 101 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 225 FUNGI - 97 PLANTS - 91 VIRUSES - 3 OTHER EUKARYOTES - 37 (SOURCE NCBI BLINK) |
AT4G21480 | PredictedAffinity Capture-MS | FSW = 0.0645
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.0190
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT5G15070 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0171
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G19510 | PredictedAffinity Capture-MS | FSW = 0.0783
| Unknown | ELONGATION FACTOR 1B ALPHA-SUBUNIT 2 (EEF1BALPHA2) |
AT5G39400 | PredictedAffinity Capture-MS | FSW = 0.0281
| Unknown | PTEN1 PHOSPHATASE |
AT5G60050 | PredictedPhylogenetic profile method | FSW = 0.0615
| Unknown | PRLI-INTERACTING FACTOR-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454