Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G50860 - ( clathrin adaptor complex small chain family protein )

37 Proteins interacs with AT3G50860
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G09590

Predicted

Phenotypic Suppression

FSW = 0.0101

Unknown

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT5G66680

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0915

Unknown

DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE
AT1G16240

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.1568

Unknown

SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR
AT1G31780

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.1517

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT2G45200

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.1826

Unknown

GOS12 (GOLGI SNARE 12) SNARE BINDING
AT2G46800

Predicted

in vitro

in vivo

FSW = 0.1270

Unknown

ZAT (ZINC TRANSPORTER OF ARABIDOPSIS THALIANA) INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER
AT2G30710

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.1839

Unknown

RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0092

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT2G40400

Predicted

Synthetic Rescue

FSW = 0.1567

Unknown

UNKNOWN PROTEIN
AT1G12900

Predicted

Synthetic Rescue

FSW = 0.1091

Unknown

GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT1G59820

Predicted

Phenotypic Enhancement

FSW = 0.1225

Unknown

ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0207

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G13210

Predicted

interologs mapping

FSW = 0.1012

Unknown

ACAL (AUTOINHIBITED CA2+/ATPASE II) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CALMODULIN BINDING
AT1G71270

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0818

Unknown

POK (POKY POLLEN TUBE)
AT2G39630

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.1467

Unknown

GLYCOSYL TRANSFERASE FAMILY 2 PROTEIN
AT3G05710

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.1639

Unknown

SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT3G20050

Predicted

Affinity Capture-Western

FSW = 0.0537

Unknown

ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT3G55480

Predicted

in vivo

Affinity Capture-MS

in vivo

Enriched domain pair

Co-expression

FSW = 0.0586

Unknown

ADAPTIN FAMILY PROTEIN
AT1G26450

Predicted

Phenotypic Enhancement

FSW = 0.1636

Unknown

BETA-13-GLUCANASE-RELATED
AT1G48760

Predicted

interologs mapping

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Enhancement

two hybrid

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.4379

Unknown

DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER
AT1G72680

Predicted

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-MS

Synthetic Rescue

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interologs mapping

Synthetic Rescue

FSW = 0.1572

Unknown

CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE
AT1G78960

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.1567

Unknown

ATLUP2 BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE
AT1G79990

Predicted

Phenotypic Enhancement

FSW = 0.1366

Unknown

LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK)
AT1G80500

Predicted

Phenotypic Enhancement

FSW = 0.0831

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK)
AT2G22530

Predicted

Phenotypic Enhancement

FSW = 0.1889

Unknown

CATALYTIC/ TRANSFERASE
AT3G28610

Predicted

Synthetic Rescue

FSW = 0.2874

Unknown

ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G46320Predicted

Affinity Capture-MS

Affinity Capture-MS

Synthetic Rescue

FSW = 0.0896

Unknown

HISTONE H4
AT4G05330

Predicted

Phenotypic Enhancement

FSW = 0.1107

Unknown

AGD13 (ARF-GAP DOMAIN 13) ARF GTPASE ACTIVATOR/ ZINC ION BINDING
AT5G22130

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0216

Unknown

PNT1 (PEANUT 1) ALPHA-14-MANNOSYLTRANSFERASE/ MANNOSYLTRANSFERASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT5G52210

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.1530

Unknown

ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING
AT5G38890

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0480

Unknown

EXORIBONUCLEASE-RELATED
AT2G22425

Predicted

interologs mapping

FSW = 0.0204

Unknown

PEPTIDASE
AT1G70790

Predicted

interologs mapping

FSW = 0.1016

Unknown

C2 DOMAIN-CONTAINING PROTEIN
AT1G52360

Predicted

interologs mapping

FSW = 0.0992

Unknown

COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE
AT1G09460

Predicted

interologs mapping

FSW = 0.1670

Unknown

GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED
AT4G35410

Predicted

Phylogenetic profile method

FSW = 0.0439

Unknown

CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN
AT2G17380

Predicted

Phylogenetic profile method

FSW = 0.0610

Unknown

AP19 PROTEIN BINDING / PROTEIN TRANSPORTER

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454