Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G50960 - ( PLP3a (Phosducin-like protein 3 homolog) beta-tubulin binding )
20 Proteins interacs with AT3G50960Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G20010 | Experimental | FSW = 0.1077
| Unknown | TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G62690 | Experimental | FSW = 0.1326
| Unknown | TUB2 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT5G44340 | Experimental | FSW = 0.2262
| Unknown | TUB4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G26030 | PredictedAffinity Capture-Western | FSW = 0.0406
| Unknown | FC1 (FERROCHELATASE 1) FERROCHELATASE |
AT4G33650 | Predictedtwo hybrid | FSW = 0.0249
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT1G10070 | Predictedbiochemical | FSW = 0.0279
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT1G15170 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybridPhenotypic Enhancement | FSW = 0.2137
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT4G34460 | PredictedReconstituted Complexinteraction prediction | FSW = 0.0197
| Unknown | AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G12250 | Predictedtwo hybrid | FSW = 0.1111
| Unknown | TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G22120 | Predictedtwo hybrid | FSW = 0.0183
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT5G67270 | Predictedsynthetic growth defect | FSW = 0.0452
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT3G03950 | Predictedtwo hybrid | FSW = 0.0556
| Unknown | PROTEIN BINDING |
AT1G08780 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0384
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G10210 | Predictedbiochemical | FSW = 0.0605
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G29990 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0538
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT3G63150 | Predictedsynthetic growth defect | FSW = 0.0188
| Unknown | MIRO2 (MIRO-RELATED GTP-ASE 2) GTPASE/ CALCIUM ION BINDING |
AT4G15475 | PredictedSynthetic Rescue | FSW = 0.0405
| Unknown | F-BOX FAMILY PROTEIN (FBL4) |
AT4G25950 | Predictedbiochemical | FSW = 0.0361
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT5G23290 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0755
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G49510 | PredictedSynthetic RescueSynthetic LethalitySynthetic Rescueinteraction prediction | FSW = 0.0493
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454