Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G51260 - ( PAD1 (20s proteasome alpha subunit pad1) endopeptidase/ peptidase/ threonine-type endopeptidase )
52 Proteins interacs with AT3G51260Locus | Method | FSW ![]() | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G75950![]() ![]() ![]() ![]() | ExperimentalReconstituted Complextwo hybrid | FSW = 0.0093
| Class B:vacuoleplastidplasma membranenucleuscytosolClass D:cytosol (p = 0.67) | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G05410![]() ![]() ![]() ![]() | Experimental | FSW = 0.0086
| Class B:vacuoleplastidnucleusClass D:mitochondrion (p = 0.82) | DREB2A DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT3G29160![]() ![]() ![]() ![]() | Experimentaltwo hybridReconstituted ComplexCo-purification | FSW = 0.0624
| Unknown | AKIN11 (ARABIDOPSIS SNF1 KINASE HOMOLOG 11) PROTEIN BINDING / PROTEIN KINASE |
AT3G01090![]() ![]() ![]() ![]() | ExperimentalReconstituted Complextwo hybridCo-purification | FSW = 0.0144
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT5G66140![]() ![]() ![]() ![]() | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2954
| Class C:vacuoleplastid | PAD2 (PROTEASOME ALPHA SUBUNIT D 2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G21720![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4163
| Class C:vacuole | PBC1 (PROTEASOME BETA SUBUNIT C1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G22630![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3838
| Class C:vacuole | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G53850![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.5342
| Class C:vacuole | PAE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G27020![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.5620
| Class C:vacuole | PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G22110![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1917
| Class C:vacuole | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G35590![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction predictionPhylogenetic profile method | FSW = 0.5779
| Class C:vacuole | PAA1 (PROTEASOME ALPHA SUBUNIT A 1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G14800![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3743
| Class C:vacuole | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G31300![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5695
| Class C:vacuole | PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G60820![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSGene neighbors methodCo-expression | FSW = 0.4388
| Class C:plastid | PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G06380![]() ![]() ![]() ![]() | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0265
| Class C:plastid | RIBOSOMAL PROTEIN-RELATED |
AT5G42790![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.5581
| Unknown | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G20140![]() ![]() ![]() ![]() | Predictedin vitrotwo hybridCo-expression | FSW = 0.2322
| Unknown | 26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE |
AT4G38600![]() ![]() ![]() ![]() | PredictedAffinity Capture-Western | FSW = 0.0401
| Unknown | KAK (KAKTUS) UBIQUITIN-PROTEIN LIGASE |
AT1G04810![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3581
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT2G20580![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1970
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT1G53750![]() ![]() ![]() ![]() | Predictedco-fractionationCo-fractionationAffinity Capture-MSco-fractionationCo-fractionationAffinity Capture-MS | FSW = 0.2442
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT2G42500![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2283
| Unknown | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G47250![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.5159
| Unknown | PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G10430![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1953
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G24820![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3087
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
AT1G75990![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2571
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
AT1G20200![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.2808
| Unknown | EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR |
AT4G19150![]() ![]() ![]() ![]() | PredictedGene fusion method | FSW = 0.0242
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G58660![]() ![]() ![]() ![]() | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0247
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT1G79750![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0591
| Unknown | ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
AT1G16470![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vitroin vivoPhylogenetic profile methodCo-expression | FSW = 0.4754
| Unknown | PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G05840![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternPhylogenetic profile method | FSW = 0.4174
| Unknown | PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G13060![]() ![]() ![]() ![]() | PredictedCo-purificationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4564
| Unknown | PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G14290![]() ![]() ![]() ![]() | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2363
| Unknown | PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G58290![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2157
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT2G36200![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0334
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT1G29150![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1615
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G56450![]() ![]() ![]() ![]() | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5186
| Unknown | PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G79210![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionPhylogenetic profile methodCo-expression | FSW = 0.3199
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT2G32730![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3044
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT3G11270![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.2980
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
AT3G13330 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2243
| Unknown | BINDING |
AT1G15440![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0112
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G38630![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1768
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G02880![]() ![]() ![]() ![]() | PredictedAffinity Capture-Western | FSW = 0.0340
| Unknown | UPL4 UBIQUITIN-PROTEIN LIGASE |
AT5G19820![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0347
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G40580![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3932
| Unknown | PBB2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G19006![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3396
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G09900![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSCo-expression | FSW = 0.3325
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT3G27430![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4122
| Unknown | PBB1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G50900![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0153
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN |
AT5G40850![]() ![]() ![]() ![]() | Predictedtwo hybridinteraction prediction | FSW = 0.0172
| Unknown | UPM1 (UROPHORPHYRIN METHYLASE 1) UROPORPHYRIN-III C-METHYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454