Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G51300 - ( ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1) GTP binding / GTPase activating protein binding / GTPase/ protein binding )

55 Proteins interacs with AT3G51300
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G79860

Experimental

two hybrid

FSW = 0.0568

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12) RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT3G05350

Experimental

FSW = 0.0460

Class D:

plastid (p = 0.78)

cytosol (p = 0.67)

 AMINOPEPTIDASE/ HYDROLASE
AT2G37080

Experimental

two hybrid

FSW = 0.0230

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 MYOSIN HEAVY CHAIN-RELATED
AT5G60210

Experimental

two hybrid

FSW = 0.0230

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 LOCATED IN PLASMA MEMBRANE EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT2G370801) HAS 77946 BLAST HITS TO 39215 PROTEINS IN 1793 SPECIES ARCHAE - 845 BACTERIA - 8877 METAZOA - 39997 FUNGI - 6049 PLANTS - 2988 VIRUSES - 248 OTHER EUKARYOTES - 18942 (SOURCE NCBI BLINK)
AT1G31650

Experimental

two hybrid

in vitro

FSW = 0.0159

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 ROPGEF14 RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT3G24620

Experimental

two hybrid

FSW = 0.0159

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 ROPGEF8 RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT4G13240

Experimental

two hybrid

in vitro

FSW = 0.0560

Class D:

nucleus (p = 0.78)

 ROPGEF9 RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT4G38430

Experimental

in vitro

two hybrid

FSW = 0.1124

Class D:

nucleus (p = 0.78)

 ROPGEF1 RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ PROTEIN BINDING
AT3G55340

Experimental

Reconstituted Complex

two hybrid

in vitro

FSW = 0.0161

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 PHIP1 (PHRAGMOPLASTIN INTERACTING PROTEIN 1) RNA BINDING / MRNA BINDING
AT1G78430

Experimental

two hybrid

FSW = 0.1017

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 16 PLANT STRUCTURES EXPRESSED DURING 8 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TROPOMYOSIN-RELATED (TAIRAT1G171402) HAS 36552 BLAST HITS TO 19717 PROTEINS IN 1278 SPECIES ARCHAE - 377 BACTERIA - 3766 METAZOA - 19812 FUNGI - 2701 PLANTS - 1105 VIRUSES - 197 OTHER EUKARYOTES - 8594 (SOURCE NCBI BLINK)
AT3G53350

Experimental

two hybrid

FSW = 0.0460

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

cytosol (p = 0.67)

 MYOSIN HEAVY CHAIN-RELATED
AT4G32650

Experimental

protein complementation assay

FSW = 0.0345

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 ATKC1 (ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1) CYCLIC NUCLEOTIDE BINDING / INWARD RECTIFIER POTASSIUM CHANNEL
AT1G05560

Experimental

interaction detection method

pull down

two hybrid

Reconstituted Complex

FSW = 0.0394

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 UGT75B1 (UDP-GLUCOSYLTRANSFERASE 75B1) UDP-GLUCOSE4-AMINOBENZOATE ACYLGLUCOSYLTRANSFERASE/ UDP-GLUCOSYLTRANSFERASE/ UDP-GLYCOSYLTRANSFERASE/ ABSCISIC ACID GLUCOSYLTRANSFERASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT5G16490

Experimental

fluorescence acceptor donor pair

fluorescence acceptor donor pair

in vitro

FSW = 0.0335

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4) PROTEIN BINDING
AT3G23380

Experimental

in vitro

FSW = 0.0159

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 RIC5 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 5) PROTEIN BINDING
AT2G33460

Experimental

in vitro

FSW = 0.0560

Class D:

nucleus (p = 0.78)

 RIC1 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 1) PROTEIN BINDING
AT4G28560

Experimental

in vitro

FSW = 0.0125

Class D:

cytosol (p = 0.67)

 RIC7 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 7) PROTEIN BINDING
AT1G04450

Experimental

fluorescence acceptor donor pair

fluorescence acceptor donor pair

FSW = 0.0690

Unknown

 RIC3 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 3) PROTEIN BINDING
AT1G17140

Experimental

two hybrid

fluorescence acceptor donor pair

fluorescence acceptor donor pair

FSW = 0.0344

Unknown

 TROPOMYOSIN-RELATED
AT1G01700

Experimental

two hybrid

FSW = 0.0335

Unknown

 ROPGEF2 RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ PROTEIN BINDING
AT1G52240

Experimental

two hybrid

FSW = 0.0159

Unknown

 ROPGEF11 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11) RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT2G45890

Experimental

two hybrid

FSW = 0.0159

Unknown

 ROPGEF4 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 4) RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT3G16130

Experimental

two hybrid

FSW = 0.0164

Unknown

 ROPGEF13 RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT3G55660

Experimental

two hybrid

FSW = 0.0159

Unknown

 ROPGEF6 RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT4G00460

Experimental

two hybrid

FSW = 0.0159

Unknown

 RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT5G02010

Experimental

two hybrid

FSW = 0.0159

Unknown

 ROPGEF7 RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT5G05940

Experimental

two hybrid

FSW = 0.0159

Unknown

 ROPGEF5 (ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 5) RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT5G19560

Experimental

two hybrid

FSW = 0.0560

Unknown

 ROPGEF10 (ROP UANINE NUCLEOTIDE EXCHANGE FACTOR 10) RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT5G12010

Predicted

Affinity Capture-MS

FSW = 0.0210

Unknown

 UNKNOWN PROTEIN
AT5G15450

Predicted

two hybrid

two hybrid

FSW = 0.0040

Unknown

 CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G62880

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0730

Unknown

 ARAC10 GTP BINDING
AT1G75840

Predicted

Phenotypic Enhancement

Phylogenetic profile method

Co-expression

FSW = 0.1623

Unknown

 ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE
AT4G28950

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1072

Unknown

 ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING
AT1G20090

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.1605

Unknown

 ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING
AT4G35020

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1258

Unknown

 ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE
AT5G45970

Predicted

Phenotypic Enhancement

Phylogenetic profile method

Co-expression

FSW = 0.1400

Unknown

 ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING
AT2G44690

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1642

Unknown

 ARAC9 GTP BINDING
AT4G35950

Predicted

Affinity Capture-MS

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.2172

Unknown

 ARAC6 (ARABIDOPSIS RAC-LIKE 6) GTP BINDING
AT3G48040

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2732

Unknown

 ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10) GTP BINDING / GTPASE
AT1G77950

Predicted

Synthetic Rescue

FSW = 0.0244

Unknown

 AGL67 (AGAMOUS-LIKE 67) TRANSCRIPTION FACTOR
AT2G44900

Predicted

Affinity Capture-MS

FSW = 0.0339

Unknown

 ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / F-BOX FAMILY PROTEIN
AT5G02730

Predicted

Affinity Capture-MS

FSW = 0.0117

Unknown

 ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT5G54650

Predicted

Shared biological function

Co-expression

FSW = 0.0552

Unknown

 FH5 (FORMIN HOMOLOGY5) ACTIN BINDING
AT2G17800

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.1625

Unknown

 ARAC1 GTP BINDING
AT3G07880

Predicted

Affinity Capture-MS

in vitro

Enriched domain pair

Co-expression

FSW = 0.1111

Unknown

 RHO GDP-DISSOCIATION INHIBITOR FAMILY PROTEIN
AT1G22550

Predicted

Affinity Capture-MS

FSW = 0.0485

Unknown

 PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT2G14880

Predicted

Affinity Capture-MS

FSW = 0.0227

Unknown

 SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT2G16740

Predicted

Synthetic Lethality

FSW = 0.0131

Unknown

 UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT2G44820

Predicted

Affinity Capture-MS

FSW = 0.0323

Unknown

 UNKNOWN PROTEIN
AT3G12760

Predicted

Affinity Capture-Western

FSW = 0.0115

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S DEFECTIVE IN CULLIN NEDDYLATION (INTERPROIPR014764) UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B N-TERMINAL (INTERPROIPR000449) PROTEIN OF UNKNOWN FUNCTION DUF298 (INTERPROIPR005176) UBA-LIKE (INTERPROIPR009060) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G158602) HAS 628 BLAST HITS TO 626 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 408 FUNGI - 99 PLANTS - 64 VIRUSES - 0 OTHER EUKARYOTES - 57 (SOURCE NCBI BLINK)
AT3G58830

Predicted

synthetic growth defect

FSW = 0.0106

Unknown

 HALOACID DEHALOGENASE (HAD) SUPERFAMILY PROTEIN
AT4G29910

Predicted

Affinity Capture-MS

FSW = 0.0157

Unknown

 ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING
AT5G01670

Predicted

Affinity Capture-MS

synthetic growth defect

FSW = 0.0120

Unknown

 ALDOSE REDUCTASE PUTATIVE
AT2G30880

Predicted

Affinity Capture-MS

in vitro

Enriched domain pair

FSW = 0.0335

Unknown

 PLECKSTRIN HOMOLOGY (PH) DOMAIN-CONTAINING PROTEIN
AT1G12070

Predicted

in vitro

Enriched domain pair

Co-expression

FSW = 0.0919

Unknown

 RHO GDP-DISSOCIATION INHIBITOR FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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