Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G51460 - ( RHD4 (ROOT HAIR DEFECTIVE4) phosphatidylinositol-45-bisphosphate 5-phosphatase/ phosphatidylinositol-4-phosphate phosphatase )
47 Proteins interacs with AT3G51460Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G79940 | Predictedinterologs mapping | FSW = 0.0128
| Class C:plasma membraneendoplasmic reticulum | ATERDJ2A HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT1G49240 | PredictedSynthetic Rescue | FSW = 0.0236
| Class C:plasma membrane | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G49340 | PredictedSynthetic Rescue | FSW = 0.0513
| Class C:plasma membrane | ATPI4K ALPHA 1-PHOSPHATIDYLINOSITOL 4-KINASE/ INOSITOL OR PHOSPHATIDYLINOSITOL KINASE |
AT3G12110 | Predictedinteraction prediction | FSW = 0.0140
| Class C:plasma membrane | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G19650 | PredictedSynthetic RescueSynthetic RescueSynthetic RescueSynthetic Rescue | FSW = 0.0200
| Class C:plasma membrane | SEC14 CYTOSOLIC FACTOR PUTATIVE / PHOSPHOGLYCERIDE TRANSFER PROTEIN PUTATIVE |
AT2G19830 | PredictedSynthetic Lethality | FSW = 0.0307
| Class C:plasma membrane | SNF72 |
AT1G08820 | Predictedinterologs mapping | FSW = 0.0352
| Class C:plasma membrane | VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2) STRUCTURAL MOLECULE |
AT1G71820 | PredictedSynthetic Rescue | FSW = 0.0293
| Class C:plasma membrane | SEC6 |
AT5G47180 | Predictedtwo hybrid | FSW = 0.0203
| Class C:plasma membrane | VESICLE-ASSOCIATED MEMBRANE FAMILY PROTEIN / VAMP FAMILY PROTEIN |
AT5G66020 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3691
| Class C:endoplasmic reticulum | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT3G51830 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1008
| Class C:endoplasmic reticulum | ATG5 PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT3G05710 | Predictedinterologs mapping | FSW = 0.0532
| Class C:endoplasmic reticulum | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT1G31780 | Predictedinterologs mapping | FSW = 0.0793
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT2G30710 | Predictedinterologs mapping | FSW = 0.0602
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT1G48850 | PredictedAffinity Capture-MS | FSW = 0.0145
| Unknown | EMB1144 (EMBRYO DEFECTIVE 1144) CHORISMATE SYNTHASE |
AT1G07420 | Predictedinterologs mapping | FSW = 0.1014
| Unknown | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT1G61520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MS | FSW = 0.0282
| Unknown | LHCA3 CHLOROPHYLL BINDING |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0158
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT5G38460 | Predictedinterologs mapping | FSW = 0.1048
| Unknown | ALG6 ALG8 GLYCOSYLTRANSFERASE FAMILY PROTEIN |
AT4G24960 | Predictedinteraction prediction | FSW = 0.0690
| Unknown | ATHVA22D |
AT1G69700 | Predictedtwo hybrid | FSW = 0.0586
| Unknown | ATHVA22C |
AT1G57550 | Predictedtwo hybrid | FSW = 0.0484
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT2G44750 | PredictedAffinity Capture-MS | FSW = 0.0457
| Unknown | TPK2 (THIAMIN PYROPHOSPHOKINASE 2) THIAMIN DIPHOSPHOKINASE |
AT4G19880 | PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK) |
AT5G02530 | PredictedAffinity Capture-MS | FSW = 0.0161
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT2G16950 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0074
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT1G20575 | PredictedColocalization | FSW = 0.0891
| Unknown | DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE |
AT5G52210 | Predictedinterologs mapping | FSW = 0.0541
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT5G27970 | Predictedinterologs mapping | FSW = 0.0901
| Unknown | BINDING |
AT1G14290 | Predictedinterologs mapping | FSW = 0.1345
| Unknown | SBH2 (SPHINGOID BASE HYDROXYLASE 2) CATALYTIC/ SPHINGOSINE HYDROXYLASE |
AT2G15230 | Predictedinterologs mapping | FSW = 0.0261
| Unknown | ATLIP1 (ARABIDOPSIS THALIANA LIPASE 1) GALACTOLIPASE/ HYDROLASE/ PHOSPHOLIPASE/ TRIACYLGLYCEROL LIPASE |
AT5G26680 | Predictedsynthetic growth defect | FSW = 0.0466
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.0586
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0555
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT1G55255 | Predictedsynthetic growth defect | FSW = 0.0739
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT1G14400 | Predictedsynthetic growth defect | FSW = 0.0463
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT1G43900 | PredictedSynthetic Lethality | FSW = 0.0988
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT1G60490 | PredictedSynthetic Lethality | FSW = 0.0609
| Unknown | ATVPS34 1-PHOSPHATIDYLINOSITOL-3-KINASE/ BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT1G71010 | PredictedSynthetic Lethality | FSW = 0.0699
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT3G18430 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0141
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT3G58560 | PredictedSynthetic Lethality | FSW = 0.0554
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT1G15920 | PredictedSynthetic Lethality | FSW = 0.0690
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT2G18770 | Predictedtwo hybridinteraction prediction | FSW = 0.0898
| Unknown | SIGNAL RECOGNITION PARTICLE BINDING |
AT3G06460 | Predictedtwo hybridinteraction prediction | FSW = 0.1067
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT1G24470 | Predictedtwo hybrid | FSW = 0.0788
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G08750 | Predictedtwo hybridinteraction prediction | FSW = 0.1957
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT2G38905 | Predictedinteraction prediction | FSW = 0.0820
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454