Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G51460 - ( RHD4 (ROOT HAIR DEFECTIVE4) phosphatidylinositol-45-bisphosphate 5-phosphatase/ phosphatidylinositol-4-phosphate phosphatase )

47 Proteins interacs with AT3G51460
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G79940

Predicted

interologs mapping

FSW = 0.0128

Class C:

plasma membrane

endoplasmic reticulum

ATERDJ2A HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT1G49240

Predicted

Synthetic Rescue

FSW = 0.0236

Class C:

plasma membrane

ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G49340

Predicted

Synthetic Rescue

FSW = 0.0513

Class C:

plasma membrane

ATPI4K ALPHA 1-PHOSPHATIDYLINOSITOL 4-KINASE/ INOSITOL OR PHOSPHATIDYLINOSITOL KINASE
AT3G12110

Predicted

interaction prediction

FSW = 0.0140

Class C:

plasma membrane

ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G19650

Predicted

Synthetic Rescue

Synthetic Rescue

Synthetic Rescue

Synthetic Rescue

FSW = 0.0200

Class C:

plasma membrane

SEC14 CYTOSOLIC FACTOR PUTATIVE / PHOSPHOGLYCERIDE TRANSFER PROTEIN PUTATIVE
AT2G19830

Predicted

Synthetic Lethality

FSW = 0.0307

Class C:

plasma membrane

SNF72
AT1G08820

Predicted

interologs mapping

FSW = 0.0352

Class C:

plasma membrane

VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2) STRUCTURAL MOLECULE
AT1G71820

Predicted

Synthetic Rescue

FSW = 0.0293

Class C:

plasma membrane

SEC6
AT5G47180

Predicted

two hybrid

FSW = 0.0203

Class C:

plasma membrane

VESICLE-ASSOCIATED MEMBRANE FAMILY PROTEIN / VAMP FAMILY PROTEIN
AT5G66020

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3691

Class C:

endoplasmic reticulum

ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE
AT3G51830

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1008

Class C:

endoplasmic reticulum

ATG5 PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE
AT3G05710

Predicted

interologs mapping

FSW = 0.0532

Class C:

endoplasmic reticulum

SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT1G31780

Predicted

interologs mapping

FSW = 0.0793

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT2G30710

Predicted

interologs mapping

FSW = 0.0602

Unknown

RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT1G48850

Predicted

Affinity Capture-MS

FSW = 0.0145

Unknown

EMB1144 (EMBRYO DEFECTIVE 1144) CHORISMATE SYNTHASE
AT1G07420

Predicted

interologs mapping

FSW = 0.1014

Unknown

SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE
AT1G61520

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Affinity Capture-MS

FSW = 0.0282

Unknown

LHCA3 CHLOROPHYLL BINDING
AT4G16830

Predicted

Affinity Capture-MS

FSW = 0.0158

Unknown

NUCLEAR RNA-BINDING PROTEIN (RGGA)
AT5G38460

Predicted

interologs mapping

FSW = 0.1048

Unknown

ALG6 ALG8 GLYCOSYLTRANSFERASE FAMILY PROTEIN
AT4G24960

Predicted

interaction prediction

FSW = 0.0690

Unknown

ATHVA22D
AT1G69700

Predicted

two hybrid

FSW = 0.0586

Unknown

ATHVA22C
AT1G57550

Predicted

two hybrid

FSW = 0.0484

Unknown

HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE
AT2G44750

Predicted

Affinity Capture-MS

FSW = 0.0457

Unknown

TPK2 (THIAMIN PYROPHOSPHOKINASE 2) THIAMIN DIPHOSPHOKINASE
AT4G19880

Predicted

Affinity Capture-MS

FSW = 0.0097

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK)
AT5G02530

Predicted

Affinity Capture-MS

FSW = 0.0161

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT2G16950

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0074

Unknown

TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER
AT1G20575

Predicted

Colocalization

FSW = 0.0891

Unknown

DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE
AT5G52210

Predicted

interologs mapping

FSW = 0.0541

Unknown

ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING
AT5G27970Predicted

interologs mapping

FSW = 0.0901

Unknown

BINDING
AT1G14290

Predicted

interologs mapping

FSW = 0.1345

Unknown

SBH2 (SPHINGOID BASE HYDROXYLASE 2) CATALYTIC/ SPHINGOSINE HYDROXYLASE
AT2G15230

Predicted

interologs mapping

FSW = 0.0261

Unknown

ATLIP1 (ARABIDOPSIS THALIANA LIPASE 1) GALACTOLIPASE/ HYDROLASE/ PHOSPHOLIPASE/ TRIACYLGLYCEROL LIPASE
AT5G26680

Predicted

synthetic growth defect

FSW = 0.0466

Unknown

ENDONUCLEASE PUTATIVE
AT5G13780

Predicted

synthetic growth defect

FSW = 0.0586

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT1G80410

Predicted

synthetic growth defect

FSW = 0.0555

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT1G55255Predicted

synthetic growth defect

FSW = 0.0739

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT1G14400

Predicted

synthetic growth defect

FSW = 0.0463

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT1G43900

Predicted

Synthetic Lethality

FSW = 0.0988

Unknown

PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE
AT1G60490

Predicted

Synthetic Lethality

FSW = 0.0609

Unknown

ATVPS34 1-PHOSPHATIDYLINOSITOL-3-KINASE/ BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT1G71010

Predicted

Synthetic Lethality

FSW = 0.0699

Unknown

PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN
AT3G18430

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0141

Unknown

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT3G58560

Predicted

Synthetic Lethality

FSW = 0.0554

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT1G15920

Predicted

Synthetic Lethality

FSW = 0.0690

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT2G18770

Predicted

two hybrid

interaction prediction

FSW = 0.0898

Unknown

SIGNAL RECOGNITION PARTICLE BINDING
AT3G06460

Predicted

two hybrid

interaction prediction

FSW = 0.1067

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT1G24470

Predicted

two hybrid

FSW = 0.0788

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT1G08750

Predicted

two hybrid

interaction prediction

FSW = 0.1957

Unknown

GPI-ANCHOR TRANSAMIDASE PUTATIVE
AT2G38905

Predicted

interaction prediction

FSW = 0.0820

Unknown

HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE

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Fasta sequences:

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454