Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G52400 - ( SYP122 (SYNTAXIN OF PLANTS 122) SNAP receptor )

10 Proteins interacs with AT3G52400
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G11820

Predicted

Shared biological function

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0529

Class C:

plasma membrane

SYP121 (SYNTAXIN OF PLANTS 121) SNAP RECEPTOR/ PROTEIN ANCHOR
AT2G33370Predicted

co-fractionation

Co-fractionation

FSW = 0.2188

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L23 (RPL23B)
AT1G74710

Predicted

synthetic growth defect

FSW = 0.0851

Unknown

ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT2G31910

Predicted

co-fractionation

Co-fractionation

FSW = 0.4325

Unknown

ATCHX21 (CATION/H+ EXCHANGER 21) SODIUMHYDROGEN ANTIPORTER
AT5G62160

Predicted

co-fractionation

Co-fractionation

Affinity Capture-Western

two hybrid

two hybrid

co-fractionation

two hybrid

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.6416

Unknown

ATZIP12 (ZINC TRANSPORTER 12 PRECURSOR) CATION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER
AT4G30800

Predicted

co-fractionation

Co-fractionation

FSW = 0.1225

Unknown

40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT1G25155Predicted

synthetic growth defect

FSW = 0.0796

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G78720

Predicted

Synthetic Lethality

FSW = 0.0381

Unknown

PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE
AT5G07070

Predicted

interologs mapping

FSW = 0.0559

Unknown

CIPK2 (CBL-INTERACTING PROTEIN KINASE 2) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G10930

Predicted

co-fractionation

Co-fractionation

FSW = 0.4812

Unknown

CIPK5 (CBL-INTERACTING PROTEIN KINASE 5) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454