Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G52560 - ( UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) protein binding / ubiquitin-protein ligase )
35 Proteins interacs with AT3G52560Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G16890 | Experimentaltwo hybrid | FSW = 0.0797
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT1G78870 | Experimentalpull downtwo hybridReconstituted Complexin vitro | FSW = 0.0612
| Unknown | UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
ETG7334 | Experimentaltwo hybrid | FSW = 0.0473
| Unknown | UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
YDR092W | Experimentaltwo hybrid | FSW = 0.0473
| Unknown | UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G56070 | Predictedtwo hybrid | FSW = 0.0132
| Unknown | LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT5G24780 | PredictedAffinity Capture-MS | FSW = 0.2846
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
AT5G63310 | Predictedtwo hybrid | FSW = 0.0298
| Unknown | NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE/ PROTEIN BINDING |
AT2G29990 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1838
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT1G23740 | PredictedAffinity Capture-MS | FSW = 0.0841
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT4G23700 | PredictedAffinity Capture-MS | FSW = 0.1016
| Unknown | ATCHX17 (CATION/H+ EXCHANGER 17) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT5G17310 | Predictedtwo hybrid | FSW = 0.0280
| Unknown | UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE PUTATIVE / UDP-GLUCOSE PYROPHOSPHORYLASE PUTATIVE / UGPASE PUTATIVE |
AT3G02870 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2323
| Unknown | VTC4 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ L-GALACTOSE-1-PHOSPHATE PHOSPHATASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE |
AT5G12350 | PredictedAffinity Capture-MS | FSW = 0.0413
| Unknown | RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING |
AT1G56170 | Predictedtwo hybridtwo hybrid | FSW = 0.0201
| Unknown | NF-YC2 (NUCLEAR FACTOR Y SUBUNIT C2) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT2G47640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1669
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT4G29390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1550
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30B) |
AT2G39795 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3750
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT3G10920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1521
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT1G50060 | PredictedAffinity Capture-MS | FSW = 0.0903
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G16050 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0914
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT3G12280 | Predictedtwo hybrid | FSW = 0.0032
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT5G17570 | Predictedtwo hybrid | FSW = 0.0245
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT1G63660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2148
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
AT2G03410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2846
| Unknown | MO25 FAMILY PROTEIN |
AT2G43360 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1893
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT3G12200 | PredictedAffinity Capture-MS | FSW = 0.0110
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G51880 | PredictedAffinity Capture-MS | FSW = 0.1355
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT3G59410 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1279
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G14240 | Predictedbiochemical | FSW = 0.0111
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
AT5G19150 | PredictedAffinity Capture-MS | FSW = 0.1413
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.0710
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G56510 | PredictedAffinity Capture-MS | FSW = 0.1016
| Unknown | APUM12 (ARABIDOPSIS PUMILIO 12) RNA BINDING / BINDING |
AT1G70660 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1691
| Unknown | MMZ2 (MMS ZWEI HOMOLOGE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G36060 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1812
| Unknown | UBIQUITIN-CONJUGATING ENZYME FAMILY PROTEIN |
AT1G23260 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1265
| Unknown | MMZ1 (MMS ZWEI HOMOLOGUE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454