Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G53110 - ( LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-dependent helicase/ RNA helicase/ RNA-dependent ATPase )
30 Proteins interacs with AT3G53110Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G72730 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1537
| Class C:plasma membrane | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT1G54270 | Predictedinterologs mappingEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1301
| Class C:plasma membrane | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT3G63130 | PredictedSynthetic Lethality | FSW = 0.0258
| Class C:plasma membrane | RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1) RAN GTPASE ACTIVATOR/ PROTEIN BINDING |
AT1G12920 | PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.0365
| Class C:plasma membrane | ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2) TRANSLATION RELEASE FACTOR |
AT1G13120 | Predictedtwo hybridtwo hybridSynthetic LethalityReconstituted Complexinterologs mappingAffinity Capture-Westernbiochemicalinteraction prediction | FSW = 0.0623
| Class C:plasma membrane | EMB1745 (EMBRYO DEFECTIVE 1745) |
AT1G18070 | Predictedinterologs mapping | FSW = 0.0366
| Unknown | EF-1-ALPHA-RELATED GTP-BINDING PROTEIN PUTATIVE |
AT1G79280 | Predictedsynthetic growth defect | FSW = 0.0831
| Unknown | NUA (NUCLEAR PORE ANCHOR) |
AT4G16830 | Predictedinterologs mapping | FSW = 0.0138
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT4G17020 | PredictedAffinity Capture-Western | FSW = 0.0817
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT3G19760 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3364
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE / DEAD BOX RNA HELICASE PUTATIVE |
AT3G13920 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1253
| Unknown | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT5G11170 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4043
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G55750 | PredictedAffinity Capture-Western | FSW = 0.0638
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT3G12480 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0661
| Unknown | NF-YC11 (NUCLEAR FACTOR Y SUBUNIT C11) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0361
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G03190 | PredictedAffinity Capture-Western | FSW = 0.0757
| Unknown | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT1G05055 | PredictedSynthetic Rescue | FSW = 0.0949
| Unknown | GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G80080 | PredictedGene fusion method | FSW = 0.0285
| Unknown | TMM (TOO MANY MOUTHS) PROTEIN BINDING / RECEPTOR |
AT1G49760 | PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.0537
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT3G09100 | PredictedSynthetic Rescue | FSW = 0.0162
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G03110 | Predictedinterologs mappinginterologs mappinginterologs mapping | FSW = 0.0480
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
AT3G54380 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0644
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT4G00660 | PredictedSynthetic LethalityEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1132
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G45810 | PredictedSynthetic LethalityEnriched domain pairCo-expression | FSW = 0.0331
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G06000 | PredictedSynthetic Lethality | FSW = 0.0557
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT1G51380 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.4242
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT3G61240 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2865
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH12) |
AT5G60990 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.3389
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH10) |
AT5G11200 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.3913
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G02065 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4802
| Unknown | DEAD/DEAH BOX HELICASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454