Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT3G53230 - ( cell division cycle protein 48 putative / CDC48 putative )

11 Proteins interacs with AT3G53230
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G09840

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2023

Class C:

plasma membrane

nucleus

endoplasmic reticulum

CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING
AT2G20140

Predicted

in vivo

in vitro

FSW = 0.0245

Class C:

plasma membrane

26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE
AT3G24350

Predicted

in vitro

FSW = 0.0211

Unknown

SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR
AT5G03340

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1894

Unknown

CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE
AT2G03670

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1696

Unknown

CDC48B ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT4G25230

Predicted

Reconstituted Complex

Affinity Capture-Western

FSW = 0.0504

Unknown

RIN2 (RPM1 INTERACTING PROTEIN 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT5G07590

Predicted

Affinity Capture-MS

FSW = 0.0774

Unknown

WD-40 REPEAT PROTEIN FAMILY
AT1G14570

Predicted

Affinity Capture-Western

FSW = 0.4860

Unknown

UBX DOMAIN-CONTAINING PROTEIN
AT3G18860

Predicted

Affinity Capture-Western

FSW = 0.0414

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G22150

Predicted

Affinity Capture-Western

FSW = 0.1015

Unknown

PUX3 PROTEIN BINDING
AT5G07650Predicted

Gene fusion method

FSW = 0.2346

Unknown

FORMIN HOMOLOGY 2 DOMAIN-CONTAINING PROTEIN / FH2 DOMAIN-CONTAINING PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454