Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G53430 - ( 60S ribosomal protein L12 (RPL12B) )
29 Proteins interacs with AT3G53430Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G26080 | Experimentalinteraction detection methodAffinity Capture-MS | FSW = 0.0147
| Unknown | ABI1 (ABA INSENSITIVE 1) CALCIUM ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G17360 | PredictedAffinity Capture-MS | FSW = 0.0878
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT3G49010 | PredictedAffinity Capture-MS | FSW = 0.1409
| Class C:plasma membrane | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G37190 | Predictedsynthetic growth defectEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.4000
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L12 (RPL12A) |
AT2G37600 | PredictedAffinity Capture-MS | FSW = 0.1650
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
AT5G60790 | PredictedAffinity Capture-MS | FSW = 0.0864
| Class C:plasma membrane | ATGCN1 TRANSPORTER |
AT1G76810 | PredictedAffinity Capture-MS | FSW = 0.3274
| Class C:plasma membrane | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN |
AT5G60670 | PredictedEnriched domain pairGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0682
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L12 (RPL12C) |
AT1G66580 | PredictedAffinity Capture-Western | FSW = 0.1937
| Unknown | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
AT4G14800 | PredictedAffinity Capture-MS | FSW = 0.0098
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G18730 | PredictedAffinity Capture-MS | FSW = 0.0455
| Unknown | RPL16B STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G67270 | PredictedAffinity Capture-MS | FSW = 0.0162
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT4G25630 | PredictedAffinity Capture-MS | FSW = 0.1031
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT1G72440 | PredictedAffinity Capture-MS | FSW = 0.1135
| Unknown | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
AT3G58660 | PredictedAffinity Capture-MS | FSW = 0.1306
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT3G62310 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0607
| Unknown | RNA HELICASE PUTATIVE |
AT1G72560 | Predictedsynthetic growth defect | FSW = 0.0381
| Unknown | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT1G61580 | PredictedAffinity Capture-MS | FSW = 0.2231
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G17620 | PredictedAffinity Capture-MS | FSW = 0.1187
| Unknown | GLYCINE-RICH PROTEIN |
AT5G59240 | PredictedAffinity Capture-MS | FSW = 0.1240
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8B) |
AT1G42440 | PredictedAffinity Capture-MS | FSW = 0.0635
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK) |
AT3G18740 | PredictedAffinity Capture-MS | FSW = 0.2000
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
AT1G04170 | PredictedAffinity Capture-MS | FSW = 0.0667
| Unknown | EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT1G13160 | PredictedAffinity Capture-MS | FSW = 0.1182
| Unknown | SDA1 FAMILY PROTEIN |
AT2G03820 | PredictedAffinity Capture-Western | FSW = 0.0816
| Unknown | NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN |
AT2G16950 | PredictedAffinity Capture-MS | FSW = 0.0194
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT2G27200 | PredictedAffinity Capture-MS | FSW = 0.2326
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT3G11450 | PredictedAffinity Capture-MS | FSW = 0.1232
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED |
AT4G19210 | PredictedAffinity Capture-MS | FSW = 0.1567
| Unknown | ATRLI2 TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454