Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G53610 - ( ATRAB8 GTP binding )

47 Proteins interacs with AT3G53610
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G23630

Experimental

two hybrid

Reconstituted Complex

FSW = 0.0644

Class A:

plasma membrane

Class B:

cytosol

BTI1 (VIRB2-INTERACTING PROTEIN 1)
AT4G11220

Experimental

two hybrid

Reconstituted Complex

FSW = 0.0634

Class A:

plasma membrane

Class B:

cytosol

BTI2 (VIRB2-INTERACTING PROTEIN 2)
AT5G41600

Experimental

two hybrid

Reconstituted Complex

FSW = 0.0730

Class A:

plasma membrane

Class B:

cytosol

BTI3 (VIRB2-INTERACTING PROTEIN 3)
AT4G17530

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.8227

Class C:

plasma membrane

ATRAB1C GTP BINDING
AT5G45750

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.8155

Class C:

plasma membrane

ATRABA1C (ARABIDOPSIS RAB GTPASE HOMOLOG A1C) GTP BINDING
AT4G19640

Predicted

Phylogenetic profile method

FSW = 0.2458

Class C:

plasma membrane

ARA7 GTP BINDING
AT1G02130

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5071

Class C:

plasma membrane

ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING
AT1G52280

Predicted

Phylogenetic profile method

FSW = 0.4103

Class C:

plasma membrane

ATRABG3D (ARABIDOPSIS RAB GTPASE HOMOLOG G3D) GTP BINDING
AT2G44610

Predicted

Phylogenetic profile method

FSW = 0.3550

Class C:

plasma membrane

RAB6A GTP BINDING / PROTEIN BINDING
AT3G46060

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.8359

Class C:

plasma membrane

ATRAB8A GTP BINDING
AT5G47520

Predicted

Phylogenetic profile method

FSW = 0.7420

Class C:

plasma membrane

ATRABA5A (ARABIDOPSIS RAB GTPASE HOMOLOG A5A) GTP BINDING
AT4G17170

Predicted

Phylogenetic profile method

FSW = 0.6666

Class C:

plasma membrane

RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) GTP BINDING / GTPASE
AT1G16920

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.5992

Class C:

plasma membrane

ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING
AT3G09900

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.4830

Class C:

plasma membrane

ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING
AT5G59840

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.6241

Class C:

plasma membrane

RAS-RELATED GTP-BINDING FAMILY PROTEIN
AT1G28550

Predicted

Phylogenetic profile method

FSW = 0.7420

Class C:

plasma membrane

ATRABA1I (ARABIDOPSIS RAB GTPASE HOMOLOG A1I) GTP BINDING
AT5G47200

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7685

Class C:

plasma membrane

ATRAB1A GTP BINDING
AT2G43130

Predicted

Phylogenetic profile method

FSW = 0.8081

Class C:

plasma membrane

ARA4 GTP BINDING / GTPASE/ PROTEIN BINDING
AT3G46830

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.7420

Class C:

plasma membrane

ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C) GTP BINDING
AT1G06400

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.6348

Class C:

plasma membrane

ARA-2 GTP BINDING
AT4G18430

Predicted

Phylogenetic profile method

FSW = 0.6482

Class C:

plasma membrane

ATRABA1E (ARABIDOPSIS RAB GTPASE HOMOLOG A1E) GTP BINDING
AT1G07410

Predicted

Phylogenetic profile method

FSW = 0.7725

Class C:

plasma membrane

ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B) GTP BINDING / GTPASE/ PROTEIN BINDING
AT5G59150

Predicted

Phylogenetic profile method

FSW = 0.8015

Class C:

plasma membrane

ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D) GTP BINDING
AT3G11730

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.5414

Class C:

plasma membrane

ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING
AT1G43890

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.8092

Class C:

plasma membrane

ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) GTP BINDING
AT4G18800

Predicted

Phylogenetic profile method

FSW = 0.3667

Class C:

plasma membrane

ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING
AT1G73640

Predicted

Phylogenetic profile method

FSW = 0.7620

Class C:

plasma membrane

ATRABA6A (ARABIDOPSIS RAB GTPASE HOMOLOG A6A) GTP BINDING
AT4G09720

Predicted

Phylogenetic profile method

FSW = 0.3445

Unknown

RAS-RELATED GTP-BINDING PROTEIN PUTATIVE
AT1G22740

Predicted

Phylogenetic profile method

FSW = 0.3445

Unknown

RABG3B GTP BINDING
AT4G35860

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7620

Unknown

ATGB2 (GTP-BINDING 2) GTP BINDING
AT1G01200

Predicted

Phylogenetic profile method

FSW = 0.8191

Unknown

ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3) GTP BINDING
AT2G22290

Predicted

Phylogenetic profile method

FSW = 0.2129

Unknown

ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT5G64990

Predicted

Phylogenetic profile method

FSW = 0.6655

Unknown

ATRABH1A (ARABIDOPSIS RAB GTPASE HOMOLOG H1A) GTP BINDING
AT5G03520

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.7526

Unknown

ATRAB8C GTP BINDING
AT3G54840

Predicted

Phylogenetic profile method

FSW = 0.1884

Unknown

ARA6 GTP BINDING / GTPASE
AT5G03530

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.8227

Unknown

RABC2A (RAB GTPASE HOMOLOG C2A) GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING
AT3G09910

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.7162

Unknown

ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B) ATP BINDING / GTP BINDING / TRANSCRIPTION FACTOR BINDING
AT4G17160

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.8325

Unknown

ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A) GTP BINDING
AT3G15060

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.7574

Unknown

ATRABA1G (ARABIDOPSIS RAB GTPASE HOMOLOG A1G) GTP BINDING
AT4G39890

Predicted

Phylogenetic profile method

FSW = 0.6462

Unknown

ATRABH1C (ARABIDOPSIS RAB GTPASE HOMOLOG H1C) GTP BINDING / PROTEIN BINDING
AT2G31680

Predicted

Phylogenetic profile method

FSW = 0.7810

Unknown

ATRABA5D (ARABIDOPSIS RAB GTPASE HOMOLOG A5D) GTP BINDING
AT5G39620

Predicted

Phylogenetic profile method

FSW = 0.3968

Unknown

ATRABG1 (ARABIDOPSIS RAB GTPASE HOMOLOG G1) GTP BINDING
AT5G60860

Predicted

Phylogenetic profile method

FSW = 0.7574

Unknown

ATRABA1F (ARABIDOPSIS RAB GTPASE HOMOLOG A1F) GTP BINDING
AT2G33870

Predicted

Phylogenetic profile method

FSW = 0.7574

Unknown

ARRABA1H (ARABIDOPSIS RAB GTPASE HOMOLOG A1H) GTP BINDING
AT5G10260

Predicted

Phylogenetic profile method

FSW = 0.1301

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G55080

Predicted

Phylogenetic profile method

FSW = 0.5614

Unknown

ATRAN4 (RAS-RELATED NUCLEAR PROTEIN 4) GTP BINDING / GTPASE/ PROTEIN BINDING
AT5G47960

Predicted

Phylogenetic profile method

FSW = 0.7574

Unknown

ATRABA4C GTP BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454