Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G53710 - ( AGD6 ARF GTPase activator/ DNA binding / zinc ion binding )
20 Proteins interacs with AT3G53710Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G62290 | Predictedin vitroin vivoAffinity Capture-MSinteraction prediction | FSW = 0.0569
| Unknown | ATARFA1E (ADP-RIBOSYLATION FACTOR A1E) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT5G55630 | Predictedinteraction prediction | FSW = 0.0348
| Unknown | ATKCO1 CALCIUM-ACTIVATED POTASSIUM CHANNEL/ ION CHANNEL/ OUTWARD RECTIFIER POTASSIUM CHANNEL |
AT3G12110 | Predictedinteraction predictionCo-expression | FSW = 0.0113
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G62020 | Predictedin vitroin vivo | FSW = 0.0349
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT ALPHA PUTATIVE |
AT5G57015 | PredictedAffinity Capture-MSin vitro | FSW = 0.0153
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G01430 | Predictedtwo hybrid | FSW = 0.0632
| Unknown | ATHB17 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17) TRANSCRIPTION FACTOR |
AT3G08720 | Predictedinteraction prediction | FSW = 0.0174
| Unknown | S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) KINASE/ PROTEIN KINASE |
AT1G29330 | Predictedin vitroin vivoin vivoin vitroAffinity Capture-MS | FSW = 0.0487
| Unknown | ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR |
AT1G51310 | Predictedtwo hybridtwo hybrid | FSW = 0.0188
| Unknown | TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE |
AT2G21390 | Predictedin vitroin vivo | FSW = 0.1250
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT ALPHA PUTATIVE |
AT3G25040 | Predictedin vitroin vivoin vivoin vitroAffinity Capture-MS | FSW = 0.1506
| Unknown | ER LUMEN PROTEIN RETAINING RECEPTOR PUTATIVE / HDEL RECEPTOR PUTATIVE |
AT5G14670 | Predictedin vitroin vivoAffinity Capture-MS | FSW = 0.0569
| Unknown | ATARFA1B (ADP-RIBOSYLATION FACTOR A1B) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT4G38570 | Predictedinterologs mappinginteraction prediction | FSW = 0.0356
| Unknown | PIS2 (PROBABLE CDP-DIACYLGLYCEROL--INOSITOL 3-PHOSPHATIDYLTRANSFERASE 2) PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS |
AT1G20575 | Predictedinteraction predictioninterologs mapping | FSW = 0.0417
| Unknown | DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE |
AT5G20350 | Predictedinteraction prediction | FSW = 0.0331
| Unknown | TIP1 (TIP GROWTH DEFECTIVE 1) S-ACYLTRANSFERASE/ ACYL BINDING |
AT2G36300 | Predictedinteraction prediction | FSW = 0.0134
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT2G43650 | Predictedinteraction prediction | FSW = 0.0776
| Unknown | EMB2777 (EMBRYO DEFECTIVE 2777) |
AT1G36980 | Predictedinteraction prediction | FSW = 0.0994
| Unknown | UNKNOWN PROTEIN |
AT2G35660 | Predictedinteraction prediction | FSW = 0.0994
| Unknown | CTF2A MONOOXYGENASE/ OXIDOREDUCTASE |
AT1G07740 | PredictedGene fusion method | FSW = 0.0381
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454