Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G53710 - ( AGD6 ARF GTPase activator/ DNA binding / zinc ion binding )

20 Proteins interacs with AT3G53710
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G62290

Predicted

in vitro

in vivo

Affinity Capture-MS

interaction prediction

FSW = 0.0569

Unknown

ATARFA1E (ADP-RIBOSYLATION FACTOR A1E) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING
AT5G55630

Predicted

interaction prediction

FSW = 0.0348

Unknown

ATKCO1 CALCIUM-ACTIVATED POTASSIUM CHANNEL/ ION CHANNEL/ OUTWARD RECTIFIER POTASSIUM CHANNEL
AT3G12110

Predicted

interaction prediction

Co-expression

FSW = 0.0113

Unknown

ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G62020

Predicted

in vitro

in vivo

FSW = 0.0349

Unknown

COATOMER PROTEIN COMPLEX SUBUNIT ALPHA PUTATIVE
AT5G57015

Predicted

Affinity Capture-MS

in vitro

FSW = 0.0153

Unknown

CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G01430

Predicted

two hybrid

FSW = 0.0632

Unknown

ATHB17 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17) TRANSCRIPTION FACTOR
AT3G08720

Predicted

interaction prediction

FSW = 0.0174

Unknown

S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) KINASE/ PROTEIN KINASE
AT1G29330

Predicted

in vitro

in vivo

in vivo

in vitro

Affinity Capture-MS

FSW = 0.0487

Unknown

ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR
AT1G51310

Predicted

two hybrid

two hybrid

FSW = 0.0188

Unknown

TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
AT2G21390

Predicted

in vitro

in vivo

FSW = 0.1250

Unknown

COATOMER PROTEIN COMPLEX SUBUNIT ALPHA PUTATIVE
AT3G25040

Predicted

in vitro

in vivo

in vivo

in vitro

Affinity Capture-MS

FSW = 0.1506

Unknown

ER LUMEN PROTEIN RETAINING RECEPTOR PUTATIVE / HDEL RECEPTOR PUTATIVE
AT5G14670

Predicted

in vitro

in vivo

Affinity Capture-MS

FSW = 0.0569

Unknown

ATARFA1B (ADP-RIBOSYLATION FACTOR A1B) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING
AT4G38570

Predicted

interologs mapping

interaction prediction

FSW = 0.0356

Unknown

PIS2 (PROBABLE CDP-DIACYLGLYCEROL--INOSITOL 3-PHOSPHATIDYLTRANSFERASE 2) PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS
AT1G20575

Predicted

interaction prediction

interologs mapping

FSW = 0.0417

Unknown

DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE
AT5G20350

Predicted

interaction prediction

FSW = 0.0331

Unknown

TIP1 (TIP GROWTH DEFECTIVE 1) S-ACYLTRANSFERASE/ ACYL BINDING
AT2G36300

Predicted

interaction prediction

FSW = 0.0134

Unknown

INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN
AT2G43650

Predicted

interaction prediction

FSW = 0.0776

Unknown

EMB2777 (EMBRYO DEFECTIVE 2777)
AT1G36980

Predicted

interaction prediction

FSW = 0.0994

Unknown

UNKNOWN PROTEIN
AT2G35660

Predicted

interaction prediction

FSW = 0.0994

Unknown

CTF2A MONOOXYGENASE/ OXIDOREDUCTASE
AT1G07740

Predicted

Gene fusion method

FSW = 0.0381

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454