Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G53730 - ( histone H4 )
69 Proteins interacs with AT3G53730Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | PredictedAffinity Capture-MS | FSW = 0.1677
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT1G07660 | PredictedGene fusion method | FSW = 0.0260
| Unknown | HISTONE H4 |
AT2G01250 | PredictedAffinity Capture-MS | FSW = 0.2328
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT5G24780 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4879
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
AT2G29990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternSynthetic Lethality | FSW = 0.4651
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT2G19860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2130
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G63130 | PredictedReconstituted Complex | FSW = 0.0120
| Unknown | RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1) RAN GTPASE ACTIVATOR/ PROTEIN BINDING |
AT5G59690 | PredictedGene fusion method | FSW = 0.0249
| Unknown | HISTONE H4 |
AT4G26970 | PredictedAffinity Capture-MS | FSW = 0.5141
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT1G19660 | PredictedSynthetic Lethality | FSW = 0.0245
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT4G23430 | PredictedAffinity Capture-MS | FSW = 0.4265
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G75840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3855
| Unknown | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.3505
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT2G21540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5656
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT1G22300 | PredictedAffinity Capture-MS | FSW = 0.0661
| Unknown | GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G22120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5680
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT1G70490 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2585
| Unknown | ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT4G35310 | PredictedAffinity Capture-MS | FSW = 0.0862
| Unknown | CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G35690 | PredictedAffinity Capture-MS | FSW = 0.0962
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.2078
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT3G10920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4266
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT2G18450 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0937
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT2G14580 | PredictedSynthetic Lethality | FSW = 0.0513
| Unknown | ATPRB1 |
AT5G57625 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5052
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3823
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G76400 | PredictedAffinity Capture-MS | FSW = 0.0547
| Unknown | RIBOPHORIN I FAMILY PROTEIN |
AT3G16050 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4549
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT2G27550 | PredictedAffinity Capture-MS | FSW = 0.2262
| Unknown | ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) PHOSPHATIDYLETHANOLAMINE BINDING |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0519
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G24706 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4440
| Unknown | UNKNOWN PROTEIN |
AT1G58520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.6567
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
AT1G64480 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1993
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G78970 | PredictedAffinity Capture-MS | FSW = 0.0769
| Unknown | LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT2G16740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1699
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G19910 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5308
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0463
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G41530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.5154
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G43360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5743
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT3G11900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5243
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G18850 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3239
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G19190 | PredictedAffinity Capture-MS | FSW = 0.0448
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ATG2 C-TERMINAL (INTERPROIPR015412) HAS 603 BLAST HITS TO 514 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 19 METAZOA - 326 FUNGI - 168 PLANTS - 38 VIRUSES - 0 OTHER EUKARYOTES - 52 (SOURCE NCBI BLINK) |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.2309
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G30842 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2270
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G49880 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5195
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G51880 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5017
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G78290 | PredictedAffinity Capture-MS | FSW = 0.5143
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT2G01770 | PredictedAffinity Capture-MS | FSW = 0.5630
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT2G03040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1462
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G17620 | PredictedAffinity Capture-MS | FSW = 0.2335
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G34250 | PredictedAffinity Capture-MS | FSW = 0.2845
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G37760 | PredictedAffinity Capture-MS | FSW = 0.3225
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.3627
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT2G47570 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3636
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G59410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4199
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G17380 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3418
| Unknown | MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT4G19645 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4145
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT4G26810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3912
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT4G35620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5217
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G17000 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3357
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G19150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4390
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G19820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3243
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G20060 | PredictedAffinity Capture-MS | FSW = 0.5293
| Unknown | PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN |
AT5G27640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5259
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT5G06150 | PredictedAffinity Capture-MS | FSW = 0.0265
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G24670 | PredictedAffinity Capture-MS | FSW = 0.1107
| Unknown | CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
AT3G46320 | PredictedGene fusion method | FSW = 0.0446
| Unknown | HISTONE H4 |
AT5G59970 | PredictedGene fusion method | FSW = 0.1497
| Unknown | HISTONE H4 |
AT1G07820 | PredictedGene fusion method | FSW = 0.0542
| Unknown | HISTONE H4 |
AT3G45930 | PredictedGene fusion method | FSW = 0.1206
| Unknown | HISTONE H4 |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454