Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G53960 - ( proton-dependent oligopeptide transport (POT) family protein )
42 Proteins interacs with AT3G53960Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G14120 | Predictedsynthetic growth defect | FSW = 0.0090
| Class C:plasma membrane | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT5G56350 | PredictedAffinity Capture-Western | FSW = 0.0443
| Class C:plasma membrane | PYRUVATE KINASE PUTATIVE |
AT5G26340 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.0572
| Class C:plasma membrane | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G54140 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6878
| Class C:plasma membrane | PTR1 (PEPTIDE TRANSPORTER 1) DIPEPTIDE TRANSPORTER/ TRANSPORTER/ TRIPEPTIDE TRANSPORTER |
AT4G21680 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3197
| Class C:plasma membrane | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G12110 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5637
| Class C:plasma membrane | NRT11 NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
AT1G33440 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6878
| Class C:plasma membrane | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G59740 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5290
| Class C:plasma membrane | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT3G16180 | PredictedPhylogenetic profile method | FSW = 0.6033
| Class C:plasma membrane | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT2G45170 | Predictedsynthetic growth defect | FSW = 0.0496
| Unknown | ATATG8E MICROTUBULE BINDING |
AT2G02040 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6878
| Unknown | PTR2 (PEPTIDE TRANSPORTER 2) DIPEPTIDE TRANSPORTER/ HIGH AFFINITY OLIGOPEPTIDE TRANSPORTER/ NITRATE TRANSMEMBRANE TRANSPORTER/ PEPTIDE TRANSPORTER/ TRANSPORTER/ TRIPEPTIDE TRANSPORTER |
AT1G52190 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7164
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G07180 | Predictedsynthetic growth defect | FSW = 0.0717
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT5G35160 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.1336
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE GOLGI APPARATUS EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NONASPANIN (TM9SF) (INTERPROIPR004240) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G126501) HAS 1053 BLAST HITS TO 1004 PROTEINS IN 163 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 478 FUNGI - 143 PLANTS - 250 VIRUSES - 0 OTHER EUKARYOTES - 182 (SOURCE NCBI BLINK) |
AT5G24090 | PredictedSynthetic LethalityColocalizationSynthetic Lethalityinterologs mapping | FSW = 0.1509
| Unknown | ACIDIC ENDOCHITINASE (CHIB1) |
AT2G47990 | PredictedAffinity Capture-Western | FSW = 0.0436
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
AT1G29630 | Predictedsynthetic growth defect | FSW = 0.0151
| Unknown | NUCLEASE |
AT1G31170 | Predictedtwo hybridtwo hybridAffinity Capture-Western | FSW = 0.0712
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G66240 | Predictedsynthetic growth defect | FSW = 0.1046
| Unknown | ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) METAL ION BINDING |
AT1G74810 | Predictedsynthetic growth defectAffinity Capture-Western | FSW = 0.0947
| Unknown | BOR5 ANION EXCHANGER |
AT2G34250 | PredictedSynthetic Rescue | FSW = 0.0909
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT3G47300 | PredictedSynthetic Rescuetwo hybridtwo hybridSynthetic Lethality | FSW = 0.3091
| Unknown | SELT (SELT-LIKE PROTEIN PRECURSOR) SELENIUM BINDING |
AT2G40930 | PredictedAffinity Capture-MS | FSW = 0.2077
| Unknown | UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5) UBIQUITIN-SPECIFIC PROTEASE |
AT3G61740 | Predictedtwo hybridSynthetic Lethality | FSW = 0.1280
| Unknown | SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G20280 | PredictedAffinity Capture-Western | FSW = 0.0625
| Unknown | TAF11 (TBP-ASSOCIATED FACTOR 11) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT5G55180 | PredictedAffinity Capture-Western | FSW = 0.2795
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT5G60550 | Predictedsynthetic growth defect | FSW = 0.1068
| Unknown | GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) KINASE |
AT1G62200 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6613
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G68570 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7018
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT2G26690 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7164
| Unknown | NITRATE TRANSPORTER (NTP2) |
AT5G19640 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7164
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G27040 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3178
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT2G40460 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6743
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G46040 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7018
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT2G02020 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6878
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT2G37900 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7164
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G13400 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5210
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G46050 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7164
| Unknown | PTR3 (PEPTIDE TRANSPORTER 3) DIPEPTIDE TRANSPORTER/ TRANSPORTER/ TRIPEPTIDE TRANSPORTER |
AT1G22540 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6878
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G01180 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6743
| Unknown | PTR5 (PEPTIDE TRANSPORTER 5) DIPEPTIDE TRANSPORTER/ TRANSPORTER |
AT1G32450 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7164
| Unknown | NRT15 (NITRATE TRANSPORTER 15) NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
AT1G18880 | PredictedPhylogenetic profile method | FSW = 0.7018
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454