Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G54150 - ( embryo-abundant protein-related )
21 Proteins interacs with AT3G54150Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.1662
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT2G29990 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2292
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.1410
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G23600 | PredictedAffinity Capture-MS | FSW = 0.0230
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT1G70490 | PredictedAffinity Capture-MS | FSW = 0.2256
| Unknown | ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT5G59960 | PredictedAffinity Capture-MS | FSW = 0.0133
| Unknown | UNKNOWN PROTEIN |
AT2G47640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2079
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT2G39795 | PredictedAffinity Capture-MS | FSW = 0.4167
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT3G20970 | PredictedAffinity Capture-MS | FSW = 0.0913
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.1590
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT1G63660 | PredictedAffinity Capture-MS | FSW = 0.2683
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
AT2G43360 | PredictedAffinity Capture-MS | FSW = 0.2823
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.1390
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT2G03410 | PredictedAffinity Capture-MS | FSW = 0.3923
| Unknown | MO25 FAMILY PROTEIN |
AT2G47570 | PredictedAffinity Capture-MS | FSW = 0.0686
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G12200 | PredictedAffinity Capture-MS | FSW = 0.0254
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G59410 | PredictedAffinity Capture-MS | FSW = 0.1750
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G25860 | PredictedAffinity Capture-MS | FSW = 0.1970
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
AT4G29140 | PredictedAffinity Capture-MS | FSW = 0.0450
| Unknown | MATE EFFLUX PROTEIN-RELATED |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.1096
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT3G61210 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0230
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454