Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G54250 - ( mevalonate diphosphate decarboxylase putative )

7 Proteins interacs with AT3G54250
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G15200

Predicted

two hybrid

FSW = 0.0327

Unknown

40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT5G09590

Predicted

two hybrid

Affinity Capture-Western

FSW = 0.0143

Unknown

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT4G37910

Predicted

two hybrid

Affinity Capture-Western

in vivo

FSW = 0.0252

Unknown

MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT3G54280

Predicted

two hybrid

Affinity Capture-Western

in vivo

Co-expression

FSW = 0.0207

Unknown

RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING
AT4G16700

Predicted

two hybrid

two hybrid

FSW = 0.0727

Unknown

PSD1 (PHOSPHATIDYLSERINE DECARBOXYLASE 1) PHOSPHATIDYLSERINE DECARBOXYLASE
AT5G39850

Predicted

two hybrid

FSW = 0.1381

Unknown

40S RIBOSOMAL PROTEIN S9 (RPS9C)
AT2G38700

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0800

Unknown

MVD1 (MEVALONATE DIPHOSPHATE DECARBOXYLASE 1) DIPHOSPHOMEVALONATE DECARBOXYLASE/ PROTEIN HOMODIMERIZATION

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454