Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G54300 - ( ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) )

32 Proteins interacs with AT3G54300
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G38960

Predicted

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.1720

Class C:

endoplasmic reticulum

AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING
AT2G33120

Predicted

Phylogenetic profile method

FSW = 0.1488

Unknown

SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)
AT4G17730

Predicted

Affinity Capture-MS

FSW = 0.0500

Unknown

SYP23 (SYNTAXIN OF PLANTS 23) SNAP RECEPTOR
AT1G72730

Predicted

Affinity Capture-MS

FSW = 0.1467

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE
AT4G32150

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4286

Unknown

ATVAMP711 (ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 711)
AT5G22360

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3857

Unknown

ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714)
AT2G25340

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2857

Unknown

ATVAMP712 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 712)
AT5G11150

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2755

Unknown

ATVAMP713 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 713)
AT4G01840

Predicted

Affinity Capture-MS

FSW = 0.0152

Unknown

KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5) OUTWARD RECTIFIER POTASSIUM CHANNEL
AT1G04760

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3351

Unknown

ATVAMP726
AT1G07790

Predicted

Affinity Capture-MS

FSW = 0.1151

Unknown

HTB1 DNA BINDING
AT1G04750

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0534

Unknown

VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT4G04720

Predicted

Affinity Capture-MS

FSW = 0.0969

Unknown

CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G45380

Predicted

Affinity Capture-MS

FSW = 0.1897

Unknown

SODIUMSOLUTE SYMPORTER FAMILY PROTEIN
AT3G25800

Predicted

Affinity Capture-MS

FSW = 0.1882

Unknown

PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT4G15780

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2571

Unknown

ATVAMP724
AT4G00520

Predicted

Affinity Capture-MS

FSW = 0.0111

Unknown

ACYL-COA THIOESTERASE FAMILY PROTEIN
AT4G14340

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2566

Unknown

CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G59960

Predicted

Affinity Capture-MS

FSW = 0.1353

Unknown

UNKNOWN PROTEIN
AT1G52300

Predicted

Affinity Capture-MS

FSW = 0.0052

Unknown

60S RIBOSOMAL PROTEIN L37 (RPL37B)
AT1G62800

Predicted

Affinity Capture-MS

FSW = 0.0132

Unknown

ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS
AT3G14290

Predicted

Affinity Capture-MS

FSW = 0.0106

Unknown

PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G02100

Predicted

Affinity Capture-MS

FSW = 0.0108

Unknown

LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN
AT1G33090

Predicted

Affinity Capture-MS

FSW = 0.0158

Unknown

MATE EFFLUX FAMILY PROTEIN
AT2G31060

Predicted

Affinity Capture-MS

Affinity Capture-Western

two hybrid

FSW = 0.2534

Unknown

ELONGATION FACTOR FAMILY PROTEIN
AT3G53880

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

FSW = 0.1324

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT4G14670

Predicted

Affinity Capture-MS

FSW = 0.0286

Unknown

CLPB2 ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G31985

Predicted

two hybrid

Affinity Capture-MS

two hybrid

Affinity Capture-Western

FSW = 0.3266

Unknown

60S RIBOSOMAL PROTEIN L39 (RPL39C)
AT5G03030

Predicted

Affinity Capture-Western

FSW = 0.3506

Unknown

DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT5G14850

Predicted

two hybrid

FSW = 0.0476

Unknown

MANNOSYLTRANSFERASE PUTATIVE
AT5G48710

Predicted

Affinity Capture-MS

FSW = 0.0163

Unknown

UBIQUITIN-RELATED
AT2G03430

Predicted

Gene fusion method

FSW = 0.0109

Unknown

ANKYRIN REPEAT FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454