Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G54340 - ( AP3 (APETALA 3) DNA binding / transcription factor )

7 Proteins interacs with AT3G54340
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G69120

Experimental

Reconstituted Complex

FSW = 0.2188

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

AP1 (APETALA1) DNA BINDING / PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT1G24260

Experimental

FSW = 0.2963

Class D:

nucleus (p = 0.78)

SEP3 (SEPALLATA3) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT5G15800

Experimental

3 hybrid method

FSW = 0.1977

Class D:

nucleus (p = 0.78)

SEP1 (SEPALLATA1) DNA BINDING / TRANSCRIPTION FACTOR
AT3G02310

Experimental

FSW = 0.3737

Class D:

nucleus (p = 0.78)

SEP2 (SEPALLATA 2) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT5G20240

Experimental

Reconstituted Complex

Reconstituted Complex

3 hybrid method

two hybrid

Reconstituted Complex

FSW = 0.5988

Class D:

nucleus (p = 0.78)

PI (PISTILLATA) DNA BINDING / TRANSCRIPTION FACTOR
AT4G18960

Experimental

Reconstituted Complex

FSW = 0.2338

Class D:

nucleus (p = 0.78)

AG (AGAMOUS) DNA BINDING / TRANSCRIPTION FACTOR
AT1G43850

Experimental

Reconstituted Complex

FSW = 0.1955

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

SEU (SEUSS) DNA BINDING / PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION COFACTOR

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454