Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G54380 - ( SAC3/GANP family protein )

93 Proteins interacs with AT3G54380
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G45130

Predicted

Phenotypic Enhancement

FSW = 0.0466

Unknown

RHA1 (RAB HOMOLOG 1) GTP BINDING
AT3G22110

Predicted

Phenotypic Suppression

FSW = 0.1068

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G13710

Predicted

Phenotypic Suppression

FSW = 0.0718

Unknown

SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE
AT1G14850

Predicted

Affinity Capture-MS

FSW = 0.0600

Unknown

NUP155 NUCLEOCYTOPLASMIC TRANSPORTER
AT5G59690Predicted

Phenotypic Enhancement

FSW = 0.0894

Unknown

HISTONE H4
AT1G79280

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0600

Unknown

NUA (NUCLEAR PORE ANCHOR)
AT3G11630

Predicted

Phenotypic Suppression

FSW = 0.0244

Unknown

2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT5G53480

Predicted

Affinity Capture-MS

FSW = 0.0362

Unknown

IMPORTIN BETA-2 PUTATIVE
AT5G63110

Predicted

Phenotypic Enhancement

FSW = 0.1592

Unknown

HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT1G49340

Predicted

Synthetic Lethality

FSW = 0.0272

Unknown

ATPI4K ALPHA 1-PHOSPHATIDYLINOSITOL 4-KINASE/ INOSITOL OR PHOSPHATIDYLINOSITOL KINASE
AT3G12110

Predicted

Synthetic Rescue

Synthetic Rescue

FSW = 0.0708

Unknown

ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G11890

Predicted

Phenotypic Enhancement

FSW = 0.1330

Unknown

SEC22 TRANSPORTER
AT3G50360

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

Reconstituted Complex

FSW = 0.0109

Unknown

ATCEN2 (CENTRIN2) CALCIUM ION BINDING
AT1G13120

Predicted

Affinity Capture-MS

FSW = 0.0924

Unknown

EMB1745 (EMBRYO DEFECTIVE 1745)
AT3G53110

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0644

Unknown

LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-DEPENDENT HELICASE/ RNA HELICASE/ RNA-DEPENDENT ATPASE
AT1G16970

Predicted

Phenotypic Enhancement

FSW = 0.0339

Unknown

KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING
AT5G19180

Predicted

Phenotypic Suppression

FSW = 0.0899

Unknown

ECR1 (E1 C-TERMINAL RELATED 1) NEDD8 ACTIVATING ENZYME/ PROTEIN HETERODIMERIZATION/ SMALL PROTEIN ACTIVATING ENZYME
AT5G67270

Predicted

Synthetic Lethality

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1836

Unknown

ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT3G12810

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2361

Unknown

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G24310

Predicted

Affinity Capture-MS

FSW = 0.0300

Unknown

UNKNOWN PROTEIN
AT3G44530

Predicted

Phenotypic Enhancement

FSW = 0.1082

Unknown

HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G75230

Predicted

Phenotypic Suppression

FSW = 0.0045

Unknown

HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN
AT5G35910

Predicted

Phenotypic Enhancement

FSW = 0.2295

Unknown

3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT5G37720

Predicted

Affinity Capture-MS

Synthetic Lethality

FSW = 0.0484

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT1G02680

Predicted

Phenotypic Enhancement

FSW = 0.0603

Unknown

TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT2G43810

Predicted

Phenotypic Enhancement

FSW = 0.1809

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT1G19120

Predicted

Phenotypic Enhancement

FSW = 0.1347

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G03190

Predicted

Phenotypic Enhancement

FSW = 0.1289

Unknown

UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT5G44200

Predicted

Affinity Capture-MS

FSW = 0.0583

Unknown

CBP20 (CAP-BINDING PROTEIN 20) RNA BINDING / RNA CAP BINDING
AT3G06720

Predicted

Affinity Capture-MS

FSW = 0.0515

Unknown

IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT1G07370

Predicted

Phenotypic Enhancement

FSW = 0.1753

Unknown

PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT2G24500

Predicted

Phenotypic Suppression

FSW = 0.1344

Unknown

FZF TRANSCRIPTION FACTOR
AT2G36740

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2796

Unknown

SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT1G05055

Predicted

Phenotypic Enhancement

FSW = 0.0855

Unknown

GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT2G13370

Predicted

Phenotypic Enhancement

FSW = 0.1345

Unknown

CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G15430

Predicted

Phenotypic Enhancement

FSW = 0.0989

Unknown

NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT2G44950

Predicted

Phenotypic Enhancement

FSW = 0.1898

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT1G59900

Predicted

Phenotypic Suppression

FSW = 0.0612

Unknown

AT-E1 ALPHA OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)
AT1G75510

Predicted

Phenotypic Enhancement

FSW = 0.1389

Unknown

TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN
AT5G66020

Predicted

Phenotypic Suppression

FSW = 0.0735

Unknown

ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE
AT5G66130

Predicted

Phenotypic Enhancement

FSW = 0.0543

Unknown

ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)
AT3G25980

Predicted

Phenotypic Enhancement

FSW = 0.0856

Unknown

MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT4G16420

Predicted

Affinity Capture-MS

FSW = 0.0295

Unknown

ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR
AT5G19910

Predicted

Phenotypic Enhancement

FSW = 0.1945

Unknown

SOH1 FAMILY PROTEIN
AT3G07880

Predicted

Phenotypic Enhancement

FSW = 0.0424

Unknown

RHO GDP-DISSOCIATION INHIBITOR FAMILY PROTEIN
AT5G46280

Predicted

two hybrid

two hybrid

two hybrid

two hybrid

in vivo

in vivo

in vivo

in vivo

in vitro

in vitro

in vitro

in vitro

FSW = 0.0119

Unknown

DNA REPLICATION LICENSING FACTOR PUTATIVE
AT1G24706

Predicted

Affinity Capture-MS

FSW = 0.0323

Unknown

UNKNOWN PROTEIN
AT1G29150

Predicted

Phenotypic Suppression

FSW = 0.0751

Unknown

ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT1G51310

Predicted

Phenotypic Suppression

FSW = 0.1316

Unknown

TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
AT1G52740

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2203

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G59660Predicted

Affinity Capture-MS

FSW = 0.0837

Unknown

NUCLEOPORIN FAMILY PROTEIN
AT1G61010

Predicted

Affinity Capture-MS

FSW = 0.0081

Unknown

CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) PROTEIN BINDING
AT1G79730

Predicted

Phenotypic Enhancement

FSW = 0.1615

Unknown

ELF7 (EARLY FLOWERING 7)
AT1G80670

Predicted

Synthetic Lethality

Affinity Capture-MS

FSW = 0.0497

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G01340

Predicted

Affinity Capture-MS

FSW = 0.0112

Unknown

PROTEIN TRANSPORT PROTEIN SEC13 FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G04680

Predicted

Affinity Capture-MS

FSW = 0.0148

Unknown

CLPS3 (CLP-SIMILAR PROTEIN 3) BINDING
AT3G13700

Predicted

Phenotypic Suppression

FSW = 0.0533

Unknown

RNA-BINDING PROTEIN PUTATIVE
AT1G04730Predicted

Phenotypic Enhancement

FSW = 0.1477

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G04950

Predicted

Affinity Capture-MS

FSW = 0.0907

Unknown

TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT1G08780

Predicted

Phenotypic Suppression

FSW = 0.2163

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G29630

Predicted

Phenotypic Suppression

FSW = 0.0123

Unknown

NUCLEASE
AT1G29990

Predicted

Phenotypic Suppression

FSW = 0.1989

Unknown

PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G54140

Predicted

Synthetic Lethality

FSW = 0.1017

Unknown

TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G59890

Predicted

Phenotypic Enhancement

FSW = 0.2721

Unknown

SNL5 (SIN3-LIKE 5)
AT1G71790

Predicted

Affinity Capture-MS

FSW = 0.0212

Unknown

F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN
AT2G06040

Predicted

Phenotypic Enhancement

FSW = 0.0233

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 10 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LEUCINE-RICH REPEAT CYSTEINE-CONTAINING SUBTYPE (INTERPROIPR006553) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G219001) HAS 3642 BLAST HITS TO 1885 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 109 METAZOA - 2066 FUNGI - 492 PLANTS - 697 VIRUSES - 0 OTHER EUKARYOTES - 278 (SOURCE NCBI BLINK)
AT2G30410

Predicted

Phenotypic Enhancement

FSW = 0.0810

Unknown

KIS (KIESEL) UNFOLDED PROTEIN BINDING
AT2G31450

Predicted

Phenotypic Suppression

FSW = 0.0104

Unknown

ENDONUCLEASE-RELATED
AT2G33560

Predicted

Phenotypic Enhancement

FSW = 0.0494

Unknown

SPINDLE CHECKPOINT PROTEIN-RELATED
AT2G34500

Predicted

Phenotypic Suppression

FSW = 0.0218

Unknown

CYP710A1 (CYTOCHROME P450 FAMILY 710 SUBFAMILY A POLYPEPTIDE 1) C-22 STEROL DESATURASE/ OXYGEN BINDING
AT3G11910

Predicted

Affinity Capture-MS

FSW = 0.0081

Unknown

UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT3G20800

Predicted

Phenotypic Suppression

FSW = 0.1025

Unknown

RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE
AT3G22480

Predicted

Phenotypic Suppression

FSW = 0.1916

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G22590

Predicted

Phenotypic Enhancement

FSW = 0.1874

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G48150

Predicted

Synthetic Lethality

FSW = 0.0133

Unknown

APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING
AT4G08960

Predicted

Phenotypic Enhancement

FSW = 0.0337

Unknown

PHOSPHOTYROSYL PHOSPHATASE ACTIVATOR (PTPA) FAMILY PROTEIN
AT4G19006

Predicted

Affinity Capture-MS

FSW = 0.0171

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT4G27180

Predicted

Phenotypic Enhancement

FSW = 0.1446

Unknown

ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR
AT4G33100

Predicted

Phenotypic Suppression

FSW = 0.0719

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MITOCHONDRIAL DISTRIBUTION AND MORPHOLOGY FAMILY 35/APOPTOSIS (INTERPROIPR007918) HAS 160 BLAST HITS TO 160 PROTEINS IN 70 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 46 PLANTS - 13 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK)
AT4G33240

Predicted

Phenotypic Enhancement

FSW = 0.2503

Unknown

1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING
AT4G38630

Predicted

Phenotypic Suppression

FSW = 0.0984

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G02310

Predicted

Phenotypic Suppression

FSW = 0.1131

Unknown

PRT6 (PROTEOLYSIS 6) UBIQUITIN-PROTEIN LIGASE
AT5G09740

Predicted

synthetic growth defect

FSW = 0.0862

Unknown

HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G10260

Predicted

Phenotypic Enhancement

FSW = 0.1867

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G10790

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1800

Unknown

UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING
AT5G13780

Predicted

Phenotypic Enhancement

FSW = 0.1409

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G45600

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.2844

Unknown

GAS41 PROTEIN BINDING
AT5G49510

Predicted

Phenotypic Enhancement

FSW = 0.1760

Unknown

PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G55310

Predicted

Phenotypic Enhancement

FSW = 0.0896

Unknown

TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I
AT5G63670

Predicted

Phenotypic Enhancement

FSW = 0.1122

Unknown

SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT5G65180

Predicted

Phenotypic Enhancement

FSW = 0.2621

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK)
AT4G10570

Predicted

Affinity Capture-MS

FSW = 0.0104

Unknown

UBP9 (UBIQUITIN-SPECIFIC PROTEASE 9) CYSTEINE-TYPE ENDOPEPTIDASE/ UBIQUITIN THIOLESTERASE
AT5G11200

Predicted

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0855

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454