Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G54440 - ( glycoside hydrolase family 2 protein )
21 Proteins interacs with AT3G54440Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G30920 | Predictedpull down | FSW = 0.0444
| Class C:plastid | CYTOSOL AMINOPEPTIDASE FAMILY PROTEIN |
AT4G11175 | Predictedpull down | FSW = 0.0345
| Class C:plastid | TRANSLATION INITIATION FACTOR IF-1 CHLOROPLAST PUTATIVE |
AT5G16440 | Predictedpull down | FSW = 0.0334
| Class C:plastid | IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1) ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE |
AT4G01800 | Predictedpull down | FSW = 0.0256
| Class C:plastid | PREPROTEIN TRANSLOCASE SECA SUBUNIT PUTATIVE |
AT5G14100 | Predictedpull down | FSW = 0.0381
| Class C:plastid | ATNAP14 TRANSPORTER |
AT5G15450 | Predictedpull down | FSW = 0.0095
| Class C:plastid | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G55220 | Predictedpull down | FSW = 0.0215
| Class C:plastid | TRIGGER FACTOR TYPE CHAPERONE FAMILY PROTEIN |
AT5G63890 | Predictedpull down | FSW = 0.0863
| Class C:plastid | ATHDH (HISTIDINOL DEHYDROGENASE) HISTIDINOL DEHYDROGENASE |
AT1G03680 | Predictedtandem affinity purification | FSW = 0.0171
| Class C:plastid | ATHM1 ENZYME ACTIVATOR |
AT5G06290 | Predictedpull down | FSW = 0.0152
| Class C:plastid | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT1G21440 | Predictedpull down | FSW = 0.0833
| Class C:plastid | MUTASE FAMILY PROTEIN |
AT4G15560 | Predictedpull down | FSW = 0.0395
| Class C:plastid | CLA1 (CLOROPLASTOS ALTERADOS 1) 1-DEOXY-D-XYLULOSE-5-PHOSPHATE SYNTHASE |
AT2G29450 | Predictedpull down | FSW = 0.0667
| Unknown | ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5) GLUTATHIONE BINDING / GLUTATHIONE TRANSFERASE |
AT1G01710 | Predictedpull down | FSW = 0.0741
| Unknown | ACYL-COA THIOESTERASE FAMILY PROTEIN |
AT5G65720 | Predictedpull down | FSW = 0.0303
| Unknown | NFS1 ATP BINDING / CYSTEINE DESULFURASE/ TRANSAMINASE |
AT5G48840 | Predictedpull down | FSW = 0.0368
| Unknown | PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC) PANTOATE-BETA-ALANINE LIGASE/ PROTEIN HOMODIMERIZATION |
AT4G27070 | Predictedpull down | FSW = 0.0115
| Unknown | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE |
AT3G44600 | Predictedpull down | FSW = 0.0417
| Unknown | CYP71 (CYCLOPHILIN71) CHROMATIN BINDING / HISTONE BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G46940 | Predictedpull down | FSW = 0.0655
| Unknown | DEOXYURIDINE 5-TRIPHOSPHATE NUCLEOTIDOHYDROLASE FAMILY |
AT5G23230 | Predictedpull down | FSW = 0.0370
| Unknown | NIC2 (NICOTINAMIDASE 2) CATALYTIC/ NICOTINAMIDASE |
AT5G55130 | Predictedpull down | FSW = 0.0175
| Unknown | CNX5 (CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 5) MO-MOLYBDOPTERIN COFACTOR SULFURASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454