Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G54660 - ( GR (GLUTATHIONE REDUCTASE) ATP binding / glutathione-disulfide reductase )
25 Proteins interacs with AT3G54660| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G09420
   | Experimentaltwo hybrid | FSW = 0.1021
| Class A:plastidmitochondrionClass B:unclearClass D:plastid (p = 0.78)mitochondrion (p = 0.82)cytosol (p = 0.67) | ATTOC64-V (ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V) AMIDASE/ BINDING / CARBON-NITROGEN LIGASE WITH GLUTAMINE AS AMIDO-N-DONOR |
| AT5G40930
| Experimentaltwo hybrid | FSW = 0.1589
| Class A:mitochondrionClass B:vacuoleplastidClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
| AT1G27390
| Experimentaltwo hybrid | FSW = 0.1078
| Class A:mitochondrionClass B:unclearplastidClass D:mitochondrion (p = 0.82)cytosol (p = 0.67) | TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ METAL ION BINDING |
| AT2G19080
| Experimentaltwo hybrid | FSW = 0.1255
| Class A:mitochondrionClass B:unclearplastidClass D:cytosol (p = 0.67) | METAXIN-RELATED |
| AT3G27080
| Experimentaltwo hybrid | FSW = 0.0611
| Class A:mitochondrionClass B:plastidClass D:plastid (p = 0.78)mitochondrion (p = 0.82)cytosol (p = 0.67) | TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
| AT3G09820
| PredictedAffinity Capture-MS | FSW = 0.1481
| Class C:plastid | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
| AT3G52150
| Predictedtwo hybrid | FSW = 0.0143
| Class C:plastid | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT3G11630
| PredictedSynthetic Lethality | FSW = 0.0069
| Class C:plastid | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
| AT4G35460
| Predictedinterologs mapping | FSW = 0.0356
| Class C:plastid | NTRB (NADPH-DEPENDENT THIOREDOXIN REDUCTASE B) THIOREDOXIN-DISULFIDE REDUCTASE |
| AT2G33340
| PredictedGene fusion method | FSW = 0.0100
| Class C:plastid | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT3G59280
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1098
| Class C:mitochondrion | TXR1 (THAXTOMIN A RESISTANT 1) |
| AT4G08690
| PredictedAffinity Capture-MS | FSW = 0.1970
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
| AT5G39950
| PredictedSynthetic Rescue | FSW = 0.0730
| Unknown | ATTRX2 (THIOREDOXIN 2) OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
| AT3G46900
| PredictedAffinity Capture-MS | FSW = 0.1339
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
| AT3G24170
| PredictedShared biological functionEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0750
| Unknown | ATGR1 (GLUTATHIONE-DISULFIDE REDUCTASE) FAD BINDING / NADP OR NADPH BINDING / GLUTATHIONE-DISULFIDE REDUCTASE/ OXIDOREDUCTASE |
| AT3G05530
| Predictedin vivoin vitrotwo hybrid | FSW = 0.0117
| Unknown | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
| AT1G76400
| PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | RIBOPHORIN I FAMILY PROTEIN |
| AT5G42850
| Predictedtwo hybridtwo hybrid | FSW = 0.0298
| Unknown | INVOLVED IN CELL REDOX HOMEOSTASIS LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S THIOREDOXIN FOLD (INTERPROIPR012335) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) PROTEIN OF UNKNOWN FUNCTION DUF953 THIOREDOXIN-LIKE (INTERPROIPR010357) HAS 237 BLAST HITS TO 237 PROTEINS IN 83 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 174 FUNGI - 29 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 13 (SOURCE NCBI BLINK) |
| AT1G06790
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1202
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT2G20410
| PredictedAffinity Capture-Westernco-fractionationCo-fractionationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSco-fractionationAffinity Capture-MSAffinity Capture-WesternColocalization | FSW = 0.1462
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
| AT2G29940
| PredictedAffinity Capture-MS | FSW = 0.1747
| Unknown | PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT3G05760
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1422
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT4G29910
| PredictedAffinity Capture-MS | FSW = 0.1744
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
| AT5G15070
| PredictedAffinity Capture-MS | FSW = 0.0069
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
| AT1G59730
| Predictedinterologs mapping | FSW = 0.0355
| Unknown | ATH7 (THIOREDOXIN H-TYPE 7) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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